Protein–RNA interactions for Protein: P43681

CHRNA4, Neuronal acetylcholine receptor subunit alpha-4, humanhuman

Predictions only

Length 627 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA4P43681 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC18.81■□□□□ 0.6
CHRNA4P43681 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CHRNA4P43681 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CHRNA4P43681 MIR564-202ENST00000385049 94 ntBASIC18.81■□□□□ 0.6
CHRNA4P43681 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CHRNA4P43681 AC087499.1-201ENST00000418141 1075 ntBASIC18.81■□□□□ 0.6
CHRNA4P43681 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC18.81■□□□□ 0.6
CHRNA4P43681 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC18.81■□□□□ 0.6
CHRNA4P43681 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC18.81■□□□□ 0.6
CHRNA4P43681 MIR3180-5-201ENST00000583743 153 ntBASIC18.81■□□□□ 0.6
CHRNA4P43681 AC090164.3-201ENST00000610780 2143 ntBASIC18.81■□□□□ 0.6
CHRNA4P43681 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
CHRNA4P43681 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC18.81■□□□□ 0.6
CHRNA4P43681 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC18.81■□□□□ 0.6
CHRNA4P43681 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC18.81■□□□□ 0.6
CHRNA4P43681 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC18.81■□□□□ 0.6
CHRNA4P43681 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC18.81■□□□□ 0.6
CHRNA4P43681 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CHRNA4P43681 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CHRNA4P43681 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CHRNA4P43681 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
CHRNA4P43681 AC099343.3-201ENST00000605834 2503 ntBASIC18.8■□□□□ 0.6
CHRNA4P43681 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CHRNA4P43681 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CHRNA4P43681 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
CHRNA4P43681 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CHRNA4P43681 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CHRNA4P43681 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
CHRNA4P43681 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
CHRNA4P43681 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC18.8■□□□□ 0.6
CHRNA4P43681 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC18.8■□□□□ 0.6
CHRNA4P43681 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC18.8■□□□□ 0.6
CHRNA4P43681 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
CHRNA4P43681 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC18.8■□□□□ 0.6
CHRNA4P43681 ELP6-205ENST00000439305 880 ntTSL 2 BASIC18.8■□□□□ 0.6
CHRNA4P43681 GXYLT1P3-201ENST00000453058 1193 ntBASIC18.8■□□□□ 0.6
CHRNA4P43681 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC18.8■□□□□ 0.6
CHRNA4P43681 ECEL1P2-202ENST00000465689 757 ntBASIC18.8■□□□□ 0.6
CHRNA4P43681 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC18.8■□□□□ 0.6
CHRNA4P43681 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CHRNA4P43681 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC18.8■□□□□ 0.6
CHRNA4P43681 CR769767.2-201ENST00000622735 460 ntBASIC18.8■□□□□ 0.6
CHRNA4P43681 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC18.8■□□□□ 0.6
CHRNA4P43681 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC18.8■□□□□ 0.6
CHRNA4P43681 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CHRNA4P43681 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC18.8■□□□□ 0.6
CHRNA4P43681 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CHRNA4P43681 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
CHRNA4P43681 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CHRNA4P43681 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
CHRNA4P43681 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CHRNA4P43681 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC18.79■□□□□ 0.6
CHRNA4P43681 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC18.79■□□□□ 0.6
CHRNA4P43681 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CHRNA4P43681 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC18.79■□□□□ 0.6
CHRNA4P43681 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CHRNA4P43681 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
CHRNA4P43681 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CHRNA4P43681 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC18.79■□□□□ 0.6
CHRNA4P43681 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CHRNA4P43681 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
CHRNA4P43681 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CHRNA4P43681 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CHRNA4P43681 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
CHRNA4P43681 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CHRNA4P43681 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC18.79■□□□□ 0.6
CHRNA4P43681 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC18.79■□□□□ 0.6
CHRNA4P43681 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC18.79■□□□□ 0.6
CHRNA4P43681 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CHRNA4P43681 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC18.79■□□□□ 0.6
CHRNA4P43681 FAM87A-204ENST00000613235 858 ntBASIC18.79■□□□□ 0.6
CHRNA4P43681 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CHRNA4P43681 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC18.79■□□□□ 0.6
CHRNA4P43681 KRT8P45-201ENST00000414328 1447 ntBASIC18.79■□□□□ 0.6
CHRNA4P43681 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CHRNA4P43681 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CHRNA4P43681 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CHRNA4P43681 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC18.79■□□□□ 0.6
CHRNA4P43681 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CHRNA4P43681 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC18.79■□□□□ 0.6
CHRNA4P43681 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC18.79■□□□□ 0.6
CHRNA4P43681 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC18.79■□□□□ 0.6
CHRNA4P43681 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CHRNA4P43681 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
CHRNA4P43681 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CHRNA4P43681 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
CHRNA4P43681 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
CHRNA4P43681 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
CHRNA4P43681 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CHRNA4P43681 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CHRNA4P43681 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC18.78■□□□□ 0.6
CHRNA4P43681 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CHRNA4P43681 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
CHRNA4P43681 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
CHRNA4P43681 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CHRNA4P43681 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CHRNA4P43681 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CHRNA4P43681 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CHRNA4P43681 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC18.78■□□□□ 0.6
CHRNA4P43681 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 50 ms