Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 MTMR9LP-203ENST00000426597 1545 ntBASIC17.81■□□□□ 0.44
MSX2P35548 REXO1L9P-201ENST00000604264 2108 ntBASIC17.81■□□□□ 0.44
MSX2P35548 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
MSX2P35548 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
MSX2P35548 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
MSX2P35548 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
MSX2P35548 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
MSX2P35548 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC17.81■□□□□ 0.44
MSX2P35548 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
MSX2P35548 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
MSX2P35548 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC17.81■□□□□ 0.44
MSX2P35548 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
MSX2P35548 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC17.81■□□□□ 0.44
MSX2P35548 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC17.8■□□□□ 0.44
MSX2P35548 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
MSX2P35548 GNE-204ENST00000539208 2190 ntTSL 2 BASIC17.8■□□□□ 0.44
MSX2P35548 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
MSX2P35548 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
MSX2P35548 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
MSX2P35548 AC138028.4-201ENST00000564984 1845 ntBASIC17.8■□□□□ 0.44
MSX2P35548 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC17.8■□□□□ 0.44
MSX2P35548 AL645608.8-201ENST00000606034 2086 ntBASIC17.8■□□□□ 0.44
MSX2P35548 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
MSX2P35548 ME3-201ENST00000323418 1068 ntTSL 5 BASIC17.8■□□□□ 0.44
MSX2P35548 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
MSX2P35548 TSPY23P-201ENST00000440136 739 ntBASIC17.8■□□□□ 0.44
MSX2P35548 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
MSX2P35548 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC17.8■□□□□ 0.44
MSX2P35548 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC17.8■□□□□ 0.44
MSX2P35548 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
MSX2P35548 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
MSX2P35548 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
MSX2P35548 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
MSX2P35548 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
MSX2P35548 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
MSX2P35548 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC17.8■□□□□ 0.44
MSX2P35548 FLYWCH1P1-201ENST00000460917 1874 ntBASIC17.8■□□□□ 0.44
MSX2P35548 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
MSX2P35548 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
MSX2P35548 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
MSX2P35548 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
MSX2P35548 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
MSX2P35548 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
MSX2P35548 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC17.79■□□□□ 0.44
MSX2P35548 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC17.79■□□□□ 0.44
MSX2P35548 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC17.79■□□□□ 0.44
MSX2P35548 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
MSX2P35548 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
MSX2P35548 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
MSX2P35548 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC17.79■□□□□ 0.44
MSX2P35548 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
MSX2P35548 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
MSX2P35548 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC17.79■□□□□ 0.44
MSX2P35548 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC17.79■□□□□ 0.44
MSX2P35548 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
MSX2P35548 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
MSX2P35548 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
MSX2P35548 AC004911.1-201ENST00000416316 871 ntBASIC17.79■□□□□ 0.44
MSX2P35548 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
MSX2P35548 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC17.79■□□□□ 0.44
MSX2P35548 NME6-213ENST00000451657 871 ntTSL 2 BASIC17.79■□□□□ 0.44
MSX2P35548 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC17.79■□□□□ 0.44
MSX2P35548 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
MSX2P35548 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC17.79■□□□□ 0.44
MSX2P35548 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
MSX2P35548 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC17.79■□□□□ 0.44
MSX2P35548 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
MSX2P35548 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC17.79■□□□□ 0.44
MSX2P35548 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
MSX2P35548 AC084018.2-201ENST00000613093 2607 ntBASIC17.79■□□□□ 0.44
MSX2P35548 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC17.79■□□□□ 0.44
MSX2P35548 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
MSX2P35548 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
MSX2P35548 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
MSX2P35548 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
MSX2P35548 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
MSX2P35548 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
MSX2P35548 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
MSX2P35548 AC012317.2-201ENST00000623305 2251 ntBASIC17.78■□□□□ 0.44
MSX2P35548 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
MSX2P35548 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC17.78■□□□□ 0.44
MSX2P35548 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC17.78■□□□□ 0.44
MSX2P35548 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
MSX2P35548 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
MSX2P35548 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC17.78■□□□□ 0.44
MSX2P35548 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
MSX2P35548 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
MSX2P35548 SERPINH1P1-201ENST00000419794 1249 ntBASIC17.78■□□□□ 0.44
MSX2P35548 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
MSX2P35548 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
MSX2P35548 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
MSX2P35548 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC17.78■□□□□ 0.44
MSX2P35548 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC17.78■□□□□ 0.44
MSX2P35548 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
MSX2P35548 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
MSX2P35548 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC17.78■□□□□ 0.44
MSX2P35548 AL121906.2-201ENST00000621597 723 ntBASIC17.78■□□□□ 0.44
MSX2P35548 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
MSX2P35548 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
MSX2P35548 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms