Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC14.23□□□□□ -0.13
HLA-DMBP28068 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
HLA-DMBP28068 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC14.23□□□□□ -0.13
HLA-DMBP28068 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC14.23□□□□□ -0.13
HLA-DMBP28068 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC14.23□□□□□ -0.13
HLA-DMBP28068 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
HLA-DMBP28068 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC14.23□□□□□ -0.13
HLA-DMBP28068 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
HLA-DMBP28068 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
HLA-DMBP28068 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
HLA-DMBP28068 KATNBL1P6-202ENST00000562413 1466 ntBASIC14.23□□□□□ -0.13
HLA-DMBP28068 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
HLA-DMBP28068 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
HLA-DMBP28068 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
HLA-DMBP28068 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
HLA-DMBP28068 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
HLA-DMBP28068 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC14.23□□□□□ -0.13
HLA-DMBP28068 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
HLA-DMBP28068 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC14.23□□□□□ -0.13
HLA-DMBP28068 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
HLA-DMBP28068 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
HLA-DMBP28068 HEIH-201ENST00000623091 1652 ntBASIC14.23□□□□□ -0.13
HLA-DMBP28068 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
HLA-DMBP28068 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC14.23□□□□□ -0.13
HLA-DMBP28068 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
HLA-DMBP28068 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
HLA-DMBP28068 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC14.23□□□□□ -0.13
HLA-DMBP28068 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC14.22□□□□□ -0.13
HLA-DMBP28068 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC14.22□□□□□ -0.13
HLA-DMBP28068 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC14.22□□□□□ -0.13
HLA-DMBP28068 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
HLA-DMBP28068 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
HLA-DMBP28068 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
HLA-DMBP28068 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
HLA-DMBP28068 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
HLA-DMBP28068 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
HLA-DMBP28068 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
HLA-DMBP28068 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
HLA-DMBP28068 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC14.22□□□□□ -0.13
HLA-DMBP28068 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC14.22□□□□□ -0.13
HLA-DMBP28068 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC14.22□□□□□ -0.13
HLA-DMBP28068 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC14.22□□□□□ -0.13
HLA-DMBP28068 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
HLA-DMBP28068 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
HLA-DMBP28068 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
HLA-DMBP28068 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
HLA-DMBP28068 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
HLA-DMBP28068 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
HLA-DMBP28068 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC14.22□□□□□ -0.13
HLA-DMBP28068 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
HLA-DMBP28068 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC14.22□□□□□ -0.13
HLA-DMBP28068 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
HLA-DMBP28068 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
HLA-DMBP28068 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC14.22□□□□□ -0.13
HLA-DMBP28068 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
HLA-DMBP28068 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC14.22□□□□□ -0.13
HLA-DMBP28068 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
HLA-DMBP28068 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
HLA-DMBP28068 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
HLA-DMBP28068 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
HLA-DMBP28068 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
HLA-DMBP28068 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
HLA-DMBP28068 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC14.21□□□□□ -0.13
HLA-DMBP28068 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
HLA-DMBP28068 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC14.21□□□□□ -0.13
HLA-DMBP28068 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC14.21□□□□□ -0.13
HLA-DMBP28068 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
HLA-DMBP28068 MTMR9LP-203ENST00000426597 1545 ntBASIC14.21□□□□□ -0.13
HLA-DMBP28068 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
HLA-DMBP28068 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
HLA-DMBP28068 NFYC-AS1-201ENST00000606277 1687 ntBASIC14.21□□□□□ -0.13
HLA-DMBP28068 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
HLA-DMBP28068 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
HLA-DMBP28068 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC14.21□□□□□ -0.13
HLA-DMBP28068 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
HLA-DMBP28068 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC14.21□□□□□ -0.13
HLA-DMBP28068 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
HLA-DMBP28068 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
HLA-DMBP28068 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC14.21□□□□□ -0.13
HLA-DMBP28068 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC14.21□□□□□ -0.13
HLA-DMBP28068 AL596275.1-201ENST00000423464 877 ntBASIC14.21□□□□□ -0.13
HLA-DMBP28068 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
HLA-DMBP28068 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC14.21□□□□□ -0.13
HLA-DMBP28068 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
HLA-DMBP28068 AC110285.5-201ENST00000611501 352 ntBASIC14.21□□□□□ -0.13
HLA-DMBP28068 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
HLA-DMBP28068 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
HLA-DMBP28068 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
HLA-DMBP28068 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC14.21□□□□□ -0.13
HLA-DMBP28068 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
HLA-DMBP28068 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC14.21□□□□□ -0.14
HLA-DMBP28068 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
HLA-DMBP28068 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC14.21□□□□□ -0.14
HLA-DMBP28068 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC14.21□□□□□ -0.14
HLA-DMBP28068 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
HLA-DMBP28068 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
HLA-DMBP28068 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
HLA-DMBP28068 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
HLA-DMBP28068 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
HLA-DMBP28068 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 73.7 ms