Protein–RNA interactions for Protein: P18887

XRCC1, DNA repair protein XRCC1, humanhuman

Predicted RBP Predictions only

Length 633 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC1P18887 HMGA1P5-201ENST00000412453 271 ntBASIC18.6■□□□□ 0.57
XRCC1P18887 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
XRCC1P18887 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
XRCC1P18887 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
XRCC1P18887 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC18.6■□□□□ 0.57
XRCC1P18887 RN7SL850P-201ENST00000579959 291 ntBASIC18.6■□□□□ 0.57
XRCC1P18887 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
XRCC1P18887 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC18.6■□□□□ 0.57
XRCC1P18887 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
XRCC1P18887 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC18.6■□□□□ 0.57
XRCC1P18887 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
XRCC1P18887 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC18.6■□□□□ 0.57
XRCC1P18887 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
XRCC1P18887 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
XRCC1P18887 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
XRCC1P18887 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
XRCC1P18887 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC18.59■□□□□ 0.57
XRCC1P18887 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
XRCC1P18887 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
XRCC1P18887 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
XRCC1P18887 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
XRCC1P18887 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC18.59■□□□□ 0.57
XRCC1P18887 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
XRCC1P18887 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC18.59■□□□□ 0.57
XRCC1P18887 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
XRCC1P18887 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
XRCC1P18887 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC18.59■□□□□ 0.57
XRCC1P18887 WAC-202ENST00000347934 2839 ntTSL 5 BASIC18.59■□□□□ 0.57
XRCC1P18887 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
XRCC1P18887 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
XRCC1P18887 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
XRCC1P18887 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC18.59■□□□□ 0.57
XRCC1P18887 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC18.59■□□□□ 0.57
XRCC1P18887 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC18.59■□□□□ 0.57
XRCC1P18887 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
XRCC1P18887 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC18.59■□□□□ 0.57
XRCC1P18887 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
XRCC1P18887 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
XRCC1P18887 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
XRCC1P18887 TEX21P-204ENST00000641479 1693 ntBASIC18.59■□□□□ 0.57
XRCC1P18887 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
XRCC1P18887 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC18.59■□□□□ 0.57
XRCC1P18887 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
XRCC1P18887 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
XRCC1P18887 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
XRCC1P18887 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
XRCC1P18887 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC18.59■□□□□ 0.57
XRCC1P18887 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
XRCC1P18887 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
XRCC1P18887 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
XRCC1P18887 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC18.58■□□□□ 0.57
XRCC1P18887 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
XRCC1P18887 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.57
XRCC1P18887 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
XRCC1P18887 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
XRCC1P18887 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
XRCC1P18887 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC18.58■□□□□ 0.57
XRCC1P18887 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
XRCC1P18887 MIR1224-201ENST00000408193 85 ntBASIC18.58■□□□□ 0.56
XRCC1P18887 LIN28AP1-201ENST00000429574 405 ntBASIC18.58■□□□□ 0.56
XRCC1P18887 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC18.58■□□□□ 0.56
XRCC1P18887 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC18.58■□□□□ 0.56
XRCC1P18887 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC18.58■□□□□ 0.56
XRCC1P18887 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC18.58■□□□□ 0.56
XRCC1P18887 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
XRCC1P18887 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
XRCC1P18887 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC18.58■□□□□ 0.56
XRCC1P18887 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC18.58■□□□□ 0.56
XRCC1P18887 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC18.58■□□□□ 0.56
XRCC1P18887 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
XRCC1P18887 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
XRCC1P18887 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
XRCC1P18887 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
XRCC1P18887 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
XRCC1P18887 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC18.57■□□□□ 0.56
XRCC1P18887 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
XRCC1P18887 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC18.57■□□□□ 0.56
XRCC1P18887 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
XRCC1P18887 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC18.57■□□□□ 0.56
XRCC1P18887 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
XRCC1P18887 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC18.57■□□□□ 0.56
XRCC1P18887 TSPY23P-201ENST00000440136 739 ntBASIC18.57■□□□□ 0.56
XRCC1P18887 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC18.57■□□□□ 0.56
XRCC1P18887 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC18.57■□□□□ 0.56
XRCC1P18887 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC18.57■□□□□ 0.56
XRCC1P18887 AC010203.1-204ENST00000548782 407 ntBASIC18.57■□□□□ 0.56
XRCC1P18887 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC18.57■□□□□ 0.56
XRCC1P18887 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC18.57■□□□□ 0.56
XRCC1P18887 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
XRCC1P18887 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
XRCC1P18887 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
XRCC1P18887 AL031598.1-201ENST00000561511 1773 ntBASIC18.57■□□□□ 0.56
XRCC1P18887 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC18.57■□□□□ 0.56
XRCC1P18887 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC18.57■□□□□ 0.56
XRCC1P18887 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
XRCC1P18887 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
XRCC1P18887 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
XRCC1P18887 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
XRCC1P18887 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
XRCC1P18887 AC141586.3-201ENST00000562166 1838 ntBASIC18.56■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms