Protein–RNA interactions for Protein: P04085

PDGFA, Platelet-derived growth factor subunit A, humanhuman

Predictions only

Length 211 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFAP04085 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
PDGFAP04085 AL512408.1-201ENST00000569378 2000 ntBASIC17.43■□□□□ 0.38
PDGFAP04085 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC17.43■□□□□ 0.38
PDGFAP04085 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
PDGFAP04085 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
PDGFAP04085 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
PDGFAP04085 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
PDGFAP04085 AC073314.1-201ENST00000568729 2216 ntBASIC17.43■□□□□ 0.38
PDGFAP04085 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
PDGFAP04085 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
PDGFAP04085 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC17.42■□□□□ 0.38
PDGFAP04085 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC17.42■□□□□ 0.38
PDGFAP04085 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
PDGFAP04085 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC17.42■□□□□ 0.38
PDGFAP04085 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
PDGFAP04085 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC17.42■□□□□ 0.38
PDGFAP04085 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
PDGFAP04085 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PDGFAP04085 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PDGFAP04085 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
PDGFAP04085 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
PDGFAP04085 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PDGFAP04085 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
PDGFAP04085 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PDGFAP04085 AL845331.1-201ENST00000424978 1190 ntBASIC17.42■□□□□ 0.38
PDGFAP04085 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
PDGFAP04085 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC17.42■□□□□ 0.38
PDGFAP04085 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC17.42■□□□□ 0.38
PDGFAP04085 UNC93B7-201ENST00000509439 705 ntBASIC17.42■□□□□ 0.38
PDGFAP04085 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC17.42■□□□□ 0.38
PDGFAP04085 MIR3180-1-201ENST00000580374 94 ntBASIC17.42■□□□□ 0.38
PDGFAP04085 MIR3180-3-201ENST00000584616 94 ntBASIC17.42■□□□□ 0.38
PDGFAP04085 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
PDGFAP04085 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
PDGFAP04085 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC17.42■□□□□ 0.38
PDGFAP04085 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC17.42■□□□□ 0.38
PDGFAP04085 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC17.42■□□□□ 0.38
PDGFAP04085 AC116562.4-201ENST00000641316 2276 ntBASIC17.42■□□□□ 0.38
PDGFAP04085 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PDGFAP04085 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC17.42■□□□□ 0.38
PDGFAP04085 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
PDGFAP04085 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC17.41■□□□□ 0.38
PDGFAP04085 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PDGFAP04085 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PDGFAP04085 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PDGFAP04085 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
PDGFAP04085 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PDGFAP04085 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
PDGFAP04085 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC17.41■□□□□ 0.38
PDGFAP04085 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
PDGFAP04085 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC17.41■□□□□ 0.38
PDGFAP04085 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC17.41■□□□□ 0.38
PDGFAP04085 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PDGFAP04085 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
PDGFAP04085 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
PDGFAP04085 PVRIG2P-201ENST00000435460 978 ntBASIC17.41■□□□□ 0.38
PDGFAP04085 FDX1P1-201ENST00000449115 551 ntBASIC17.41■□□□□ 0.38
PDGFAP04085 TSSC2-201ENST00000450217 709 ntBASIC17.41■□□□□ 0.38
PDGFAP04085 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC17.41■□□□□ 0.38
PDGFAP04085 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
PDGFAP04085 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
PDGFAP04085 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
PDGFAP04085 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PDGFAP04085 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PDGFAP04085 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC17.41■□□□□ 0.38
PDGFAP04085 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PDGFAP04085 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC17.41■□□□□ 0.38
PDGFAP04085 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
PDGFAP04085 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
PDGFAP04085 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC17.41■□□□□ 0.38
PDGFAP04085 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PDGFAP04085 AC016734.2-201ENST00000624325 1377 ntBASIC17.4■□□□□ 0.38
PDGFAP04085 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
PDGFAP04085 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC17.4■□□□□ 0.38
PDGFAP04085 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
PDGFAP04085 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
PDGFAP04085 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC17.4■□□□□ 0.38
PDGFAP04085 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC17.4■□□□□ 0.38
PDGFAP04085 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
PDGFAP04085 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PDGFAP04085 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PDGFAP04085 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PDGFAP04085 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PDGFAP04085 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
PDGFAP04085 AP000347.1-202ENST00000435868 847 ntBASIC17.4■□□□□ 0.38
PDGFAP04085 AP002383.4-201ENST00000442518 975 ntBASIC17.4■□□□□ 0.38
PDGFAP04085 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC17.4■□□□□ 0.38
PDGFAP04085 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PDGFAP04085 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
PDGFAP04085 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC17.4■□□□□ 0.38
PDGFAP04085 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC17.4■□□□□ 0.38
PDGFAP04085 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC17.4■□□□□ 0.38
PDGFAP04085 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC17.4■□□□□ 0.38
PDGFAP04085 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC17.4■□□□□ 0.38
PDGFAP04085 AC011498.5-201ENST00000592027 486 ntBASIC17.4■□□□□ 0.38
PDGFAP04085 AC024243.1-201ENST00000609234 778 ntBASIC17.4■□□□□ 0.38
PDGFAP04085 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
PDGFAP04085 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
PDGFAP04085 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
PDGFAP04085 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 61.4 ms