Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
APOEP02649 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
APOEP02649 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
APOEP02649 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
APOEP02649 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC19.52■□□□□ 0.72
APOEP02649 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC19.52■□□□□ 0.72
APOEP02649 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
APOEP02649 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC19.52■□□□□ 0.72
APOEP02649 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
APOEP02649 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.72
APOEP02649 RCC2P3-201ENST00000418112 1537 ntBASIC19.52■□□□□ 0.72
APOEP02649 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
APOEP02649 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
APOEP02649 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC19.52■□□□□ 0.72
APOEP02649 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
APOEP02649 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
APOEP02649 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
APOEP02649 RCN1P1-201ENST00000400413 996 ntBASIC19.52■□□□□ 0.72
APOEP02649 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC19.52■□□□□ 0.72
APOEP02649 FAM210CP-201ENST00000445714 574 ntBASIC19.52■□□□□ 0.72
APOEP02649 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
APOEP02649 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC19.52■□□□□ 0.72
APOEP02649 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC19.52■□□□□ 0.72
APOEP02649 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC19.52■□□□□ 0.72
APOEP02649 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC19.52■□□□□ 0.72
APOEP02649 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.72
APOEP02649 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC19.52■□□□□ 0.72
APOEP02649 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC19.52■□□□□ 0.72
APOEP02649 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
APOEP02649 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
APOEP02649 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
APOEP02649 LGALS8-AS1-201ENST00000487567 1457 ntBASIC19.52■□□□□ 0.72
APOEP02649 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
APOEP02649 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
APOEP02649 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
APOEP02649 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
APOEP02649 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC19.52■□□□□ 0.71
APOEP02649 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC19.52■□□□□ 0.71
APOEP02649 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.71
APOEP02649 KRT8P45-201ENST00000414328 1447 ntBASIC19.51■□□□□ 0.71
APOEP02649 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC19.51■□□□□ 0.71
APOEP02649 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
APOEP02649 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
APOEP02649 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC19.51■□□□□ 0.71
APOEP02649 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
APOEP02649 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
APOEP02649 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC19.51■□□□□ 0.71
APOEP02649 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
APOEP02649 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
APOEP02649 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC19.51■□□□□ 0.71
APOEP02649 TK2-213ENST00000563369 882 ntTSL 5 BASIC19.51■□□□□ 0.71
APOEP02649 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC19.51■□□□□ 0.71
APOEP02649 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC19.51■□□□□ 0.71
APOEP02649 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
APOEP02649 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC19.51■□□□□ 0.71
APOEP02649 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC19.51■□□□□ 0.71
APOEP02649 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
APOEP02649 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
APOEP02649 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
APOEP02649 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC19.51■□□□□ 0.71
APOEP02649 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
APOEP02649 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC19.5■□□□□ 0.71
APOEP02649 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
APOEP02649 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
APOEP02649 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC19.5■□□□□ 0.71
APOEP02649 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC19.5■□□□□ 0.71
APOEP02649 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
APOEP02649 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
APOEP02649 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
APOEP02649 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
APOEP02649 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC19.5■□□□□ 0.71
APOEP02649 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
APOEP02649 TMPOP1-202ENST00000424642 1267 ntBASIC19.5■□□□□ 0.71
APOEP02649 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC19.5■□□□□ 0.71
APOEP02649 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
APOEP02649 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC19.5■□□□□ 0.71
APOEP02649 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC19.5■□□□□ 0.71
APOEP02649 RN7SL850P-201ENST00000579959 291 ntBASIC19.5■□□□□ 0.71
APOEP02649 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC19.5■□□□□ 0.71
APOEP02649 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
APOEP02649 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
APOEP02649 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
APOEP02649 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC19.5■□□□□ 0.71
APOEP02649 AC073508.3-201ENST00000619697 1419 ntBASIC19.5■□□□□ 0.71
APOEP02649 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC19.5■□□□□ 0.71
APOEP02649 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC19.5■□□□□ 0.71
APOEP02649 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
APOEP02649 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
APOEP02649 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
APOEP02649 KRT8P32-201ENST00000512863 1461 ntBASIC19.49■□□□□ 0.71
APOEP02649 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
APOEP02649 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
APOEP02649 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC19.49■□□□□ 0.71
APOEP02649 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
APOEP02649 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
APOEP02649 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC19.49■□□□□ 0.71
APOEP02649 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC19.49■□□□□ 0.71
APOEP02649 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
APOEP02649 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
APOEP02649 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms