Protein–RNA interactions for Protein: O75445

USH2A, Usherin, humanhuman

Predictions only

Length 5,202 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH2AO75445 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC8.3□□□□□ -1.08
USH2AO75445 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC8.3□□□□□ -1.08
USH2AO75445 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC8.3□□□□□ -1.08
USH2AO75445 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC8.3□□□□□ -1.08
USH2AO75445 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC8.3□□□□□ -1.08
USH2AO75445 TAF8-206ENST00000472818 719 ntTSL 2 BASIC8.3□□□□□ -1.08
USH2AO75445 AP003733.1-201ENST00000491725 852 ntBASIC8.3□□□□□ -1.08
USH2AO75445 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC8.3□□□□□ -1.08
USH2AO75445 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC8.3□□□□□ -1.08
USH2AO75445 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC8.3□□□□□ -1.08
USH2AO75445 SERF2-217ENST00000630046 862 ntTSL 5 BASIC8.3□□□□□ -1.08
USH2AO75445 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC8.3□□□□□ -1.08
USH2AO75445 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC8.3□□□□□ -1.08
USH2AO75445 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC8.3□□□□□ -1.08
USH2AO75445 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC8.3□□□□□ -1.08
USH2AO75445 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC8.3□□□□□ -1.08
USH2AO75445 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC8.3□□□□□ -1.08
USH2AO75445 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC8.3□□□□□ -1.08
USH2AO75445 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC8.3□□□□□ -1.08
USH2AO75445 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC8.3□□□□□ -1.08
USH2AO75445 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC8.3□□□□□ -1.08
USH2AO75445 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC8.3□□□□□ -1.08
USH2AO75445 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC8.3□□□□□ -1.08
USH2AO75445 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC8.3□□□□□ -1.08
USH2AO75445 PAN3-AS1-201ENST00000563843 1351 ntBASIC8.3□□□□□ -1.08
USH2AO75445 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC8.3□□□□□ -1.08
USH2AO75445 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC8.3□□□□□ -1.08
USH2AO75445 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC8.3□□□□□ -1.08
USH2AO75445 RCN1P2-201ENST00000398357 915 ntBASIC8.3□□□□□ -1.08
USH2AO75445 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC8.3□□□□□ -1.08
USH2AO75445 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC8.3□□□□□ -1.08
USH2AO75445 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC8.3□□□□□ -1.08
USH2AO75445 AC093512.1-201ENST00000617969 520 ntBASIC8.3□□□□□ -1.08
USH2AO75445 AL356309.3-201ENST00000624132 1934 ntBASIC8.3□□□□□ -1.08
USH2AO75445 BID-203ENST00000399765 1879 ntTSL 2 BASIC8.29□□□□□ -1.08
USH2AO75445 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC8.29□□□□□ -1.08
USH2AO75445 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC8.29□□□□□ -1.08
USH2AO75445 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC8.29□□□□□ -1.08
USH2AO75445 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC8.29□□□□□ -1.08
USH2AO75445 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC8.29□□□□□ -1.08
USH2AO75445 PRSS29P-201ENST00000440800 595 ntBASIC8.29□□□□□ -1.08
USH2AO75445 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC8.29□□□□□ -1.08
USH2AO75445 METTL23-205ENST00000588302 925 ntTSL 5 BASIC8.29□□□□□ -1.08
USH2AO75445 AC064836.3-201ENST00000607928 673 ntBASIC8.29□□□□□ -1.08
USH2AO75445 MIR6752-201ENST00000618442 71 ntBASIC8.29□□□□□ -1.08
USH2AO75445 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC8.29□□□□□ -1.08
USH2AO75445 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC8.29□□□□□ -1.08
USH2AO75445 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC8.29□□□□□ -1.08
USH2AO75445 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC8.29□□□□□ -1.08
USH2AO75445 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC8.29□□□□□ -1.08
USH2AO75445 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC8.29□□□□□ -1.08
USH2AO75445 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC8.29□□□□□ -1.08
USH2AO75445 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC8.29□□□□□ -1.08
USH2AO75445 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC8.29□□□□□ -1.08
USH2AO75445 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC8.29□□□□□ -1.08
USH2AO75445 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC8.29□□□□□ -1.08
USH2AO75445 CD82-202ENST00000342935 967 ntTSL 5 BASIC8.29□□□□□ -1.08
USH2AO75445 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC8.29□□□□□ -1.08
USH2AO75445 FUOM-202ENST00000368551 628 ntTSL 3 BASIC8.29□□□□□ -1.08
USH2AO75445 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC8.29□□□□□ -1.08
USH2AO75445 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC8.29□□□□□ -1.08
USH2AO75445 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC8.29□□□□□ -1.08
USH2AO75445 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC8.29□□□□□ -1.08
USH2AO75445 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC8.29□□□□□ -1.08
USH2AO75445 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC8.29□□□□□ -1.08
USH2AO75445 GOLGA6L5P-202ENST00000515341 1828 ntBASIC8.29□□□□□ -1.08
USH2AO75445 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC8.29□□□□□ -1.08
USH2AO75445 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC8.29□□□□□ -1.08
USH2AO75445 RAB17-203ENST00000409576 466 ntTSL 3 BASIC8.29□□□□□ -1.08
USH2AO75445 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC8.29□□□□□ -1.08
USH2AO75445 NMU-203ENST00000507338 658 ntTSL 3 BASIC8.29□□□□□ -1.08
USH2AO75445 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC8.29□□□□□ -1.08
USH2AO75445 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC8.29□□□□□ -1.08
USH2AO75445 AC093520.2-201ENST00000561830 333 ntBASIC8.29□□□□□ -1.08
USH2AO75445 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC8.29□□□□□ -1.08
USH2AO75445 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC8.29□□□□□ -1.08
USH2AO75445 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC8.29□□□□□ -1.08
USH2AO75445 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC8.29□□□□□ -1.08
USH2AO75445 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC8.29□□□□□ -1.08
USH2AO75445 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC8.29□□□□□ -1.08
USH2AO75445 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC8.29□□□□□ -1.08
USH2AO75445 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC8.29□□□□□ -1.08
USH2AO75445 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC8.29□□□□□ -1.08
USH2AO75445 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC8.29□□□□□ -1.08
USH2AO75445 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC8.29□□□□□ -1.08
USH2AO75445 AC002310.6-201ENST00000624451 1377 ntBASIC8.29□□□□□ -1.08
USH2AO75445 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC8.29□□□□□ -1.08
USH2AO75445 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC8.29□□□□□ -1.08
USH2AO75445 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC8.29□□□□□ -1.08
USH2AO75445 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC8.29□□□□□ -1.08
USH2AO75445 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC8.29□□□□□ -1.08
USH2AO75445 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC8.29□□□□□ -1.08
USH2AO75445 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC8.29□□□□□ -1.08
USH2AO75445 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC8.29□□□□□ -1.08
USH2AO75445 AC084346.2-201ENST00000607097 949 ntBASIC8.29□□□□□ -1.08
USH2AO75445 AQP6-205ENST00000618286 829 ntTSL 5 BASIC8.29□□□□□ -1.08
USH2AO75445 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC8.29□□□□□ -1.08
USH2AO75445 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC8.29□□□□□ -1.08
USH2AO75445 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC8.29□□□□□ -1.08
USH2AO75445 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC8.29□□□□□ -1.08
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms