Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
SHOX2O60902 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
SHOX2O60902 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
SHOX2O60902 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SHOX2O60902 GAS2L1P1-201ENST00000420145 1480 ntBASIC18.69■□□□□ 0.58
SHOX2O60902 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SHOX2O60902 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
SHOX2O60902 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
SHOX2O60902 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SHOX2O60902 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SHOX2O60902 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC18.69■□□□□ 0.58
SHOX2O60902 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
SHOX2O60902 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SHOX2O60902 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SHOX2O60902 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SHOX2O60902 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SHOX2O60902 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
SHOX2O60902 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SHOX2O60902 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
SHOX2O60902 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC18.68■□□□□ 0.58
SHOX2O60902 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
SHOX2O60902 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC18.68■□□□□ 0.58
SHOX2O60902 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SHOX2O60902 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC18.68■□□□□ 0.58
SHOX2O60902 GOLGA6L5P-202ENST00000515341 1828 ntBASIC18.68■□□□□ 0.58
SHOX2O60902 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC18.68■□□□□ 0.58
SHOX2O60902 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC18.68■□□□□ 0.58
SHOX2O60902 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC18.68■□□□□ 0.58
SHOX2O60902 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
SHOX2O60902 KRT18P14-201ENST00000534205 1250 ntBASIC18.68■□□□□ 0.58
SHOX2O60902 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC18.68■□□□□ 0.58
SHOX2O60902 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
SHOX2O60902 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SHOX2O60902 AIRN-201ENST00000601203 4374 ntBASIC18.68■□□□□ 0.58
SHOX2O60902 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
SHOX2O60902 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
SHOX2O60902 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC18.68■□□□□ 0.58
SHOX2O60902 MST1L-201ENST00000442552 2185 ntBASIC18.68■□□□□ 0.58
SHOX2O60902 STK4-201ENST00000372801 2038 ntTSL 2 BASIC18.67■□□□□ 0.58
SHOX2O60902 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SHOX2O60902 AC124283.5-201ENST00000624661 1809 ntBASIC18.67■□□□□ 0.58
SHOX2O60902 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SHOX2O60902 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
SHOX2O60902 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC18.67■□□□□ 0.58
SHOX2O60902 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
SHOX2O60902 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC18.67■□□□□ 0.58
SHOX2O60902 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
SHOX2O60902 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SHOX2O60902 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SHOX2O60902 AC123595.1-201ENST00000440769 1046 ntBASIC18.67■□□□□ 0.58
SHOX2O60902 PBX1-209ENST00000485769 834 ntTSL 2 BASIC18.67■□□□□ 0.58
SHOX2O60902 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SHOX2O60902 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC18.67■□□□□ 0.58
SHOX2O60902 TFG-210ENST00000620299 1289 ntTSL 5 BASIC18.67■□□□□ 0.58
SHOX2O60902 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SHOX2O60902 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
SHOX2O60902 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SHOX2O60902 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
SHOX2O60902 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SHOX2O60902 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC18.67■□□□□ 0.58
SHOX2O60902 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SHOX2O60902 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SHOX2O60902 AL356309.3-201ENST00000624132 1934 ntBASIC18.66■□□□□ 0.58
SHOX2O60902 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC18.66■□□□□ 0.58
SHOX2O60902 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SHOX2O60902 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
SHOX2O60902 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC18.66■□□□□ 0.58
SHOX2O60902 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SHOX2O60902 AC112777.1-201ENST00000540175 1423 ntBASIC18.66■□□□□ 0.58
SHOX2O60902 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
SHOX2O60902 AC105020.1-201ENST00000435356 2205 ntBASIC18.66■□□□□ 0.58
SHOX2O60902 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SHOX2O60902 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC18.66■□□□□ 0.58
SHOX2O60902 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SHOX2O60902 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
SHOX2O60902 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC18.66■□□□□ 0.58
SHOX2O60902 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
SHOX2O60902 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
SHOX2O60902 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC18.66■□□□□ 0.58
SHOX2O60902 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SHOX2O60902 AL596257.1-201ENST00000641463 2694 ntBASIC18.66■□□□□ 0.58
SHOX2O60902 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SHOX2O60902 KRT18P68-201ENST00000392293 1000 ntBASIC18.66■□□□□ 0.58
SHOX2O60902 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SHOX2O60902 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
SHOX2O60902 RAB43-208ENST00000615093 783 ntTSL 5 BASIC18.66■□□□□ 0.58
SHOX2O60902 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC18.66■□□□□ 0.58
SHOX2O60902 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SHOX2O60902 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
SHOX2O60902 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
SHOX2O60902 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
SHOX2O60902 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SHOX2O60902 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC18.66■□□□□ 0.58
SHOX2O60902 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC18.66■□□□□ 0.58
SHOX2O60902 KRT8P45-201ENST00000414328 1447 ntBASIC18.66■□□□□ 0.58
SHOX2O60902 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
SHOX2O60902 AL513477.1-201ENST00000602865 2407 ntBASIC18.65■□□□□ 0.58
SHOX2O60902 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SHOX2O60902 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SHOX2O60902 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 50.8 ms