Protein–RNA interactions for Protein: O60493

SNX3, Sorting nexin-3, humanhuman

Predictions only

Length 162 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX3O60493 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC18.38■□□□□ 0.53
SNX3O60493 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SNX3O60493 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC18.38■□□□□ 0.53
SNX3O60493 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC18.38■□□□□ 0.53
SNX3O60493 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SNX3O60493 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
SNX3O60493 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SNX3O60493 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SNX3O60493 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SNX3O60493 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC18.38■□□□□ 0.53
SNX3O60493 AC010980.2-201ENST00000587099 1412 ntBASIC18.38■□□□□ 0.53
SNX3O60493 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SNX3O60493 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SNX3O60493 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
SNX3O60493 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
SNX3O60493 AL118508.1-201ENST00000613502 2345 ntBASIC18.38■□□□□ 0.53
SNX3O60493 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC18.38■□□□□ 0.53
SNX3O60493 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SNX3O60493 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SNX3O60493 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
SNX3O60493 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
SNX3O60493 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
SNX3O60493 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC18.37■□□□□ 0.53
SNX3O60493 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
SNX3O60493 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
SNX3O60493 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SNX3O60493 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SNX3O60493 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
SNX3O60493 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC18.37■□□□□ 0.53
SNX3O60493 KRT18P16-201ENST00000510337 1294 ntBASIC18.37■□□□□ 0.53
SNX3O60493 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC18.37■□□□□ 0.53
SNX3O60493 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
SNX3O60493 AC069236.1-201ENST00000604339 616 ntBASIC18.37■□□□□ 0.53
SNX3O60493 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
SNX3O60493 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SNX3O60493 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SNX3O60493 HCG11-201ENST00000411553 5696 ntBASIC18.37■□□□□ 0.53
SNX3O60493 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC18.37■□□□□ 0.53
SNX3O60493 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC18.37■□□□□ 0.53
SNX3O60493 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
SNX3O60493 HLA-DQB1-201ENST00000374943 1656 ntBASIC18.37■□□□□ 0.53
SNX3O60493 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SNX3O60493 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
SNX3O60493 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC18.37■□□□□ 0.53
SNX3O60493 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC18.37■□□□□ 0.53
SNX3O60493 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
SNX3O60493 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
SNX3O60493 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
SNX3O60493 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SNX3O60493 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SNX3O60493 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SNX3O60493 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
SNX3O60493 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC18.36■□□□□ 0.53
SNX3O60493 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC18.36■□□□□ 0.53
SNX3O60493 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SNX3O60493 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
SNX3O60493 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
SNX3O60493 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
SNX3O60493 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SNX3O60493 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
SNX3O60493 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SNX3O60493 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
SNX3O60493 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC18.36■□□□□ 0.53
SNX3O60493 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC18.36■□□□□ 0.53
SNX3O60493 KRT8P45-201ENST00000414328 1447 ntBASIC18.36■□□□□ 0.53
SNX3O60493 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC18.36■□□□□ 0.53
SNX3O60493 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
SNX3O60493 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SNX3O60493 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC18.36■□□□□ 0.53
SNX3O60493 SP2-202ENST00000613139 908 ntTSL 5 BASIC18.36■□□□□ 0.53
SNX3O60493 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
SNX3O60493 AC018695.7-201ENST00000624587 2492 ntBASIC18.36■□□□□ 0.53
SNX3O60493 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
SNX3O60493 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SNX3O60493 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SNX3O60493 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SNX3O60493 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
SNX3O60493 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
SNX3O60493 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC18.35■□□□□ 0.53
SNX3O60493 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
SNX3O60493 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SNX3O60493 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
SNX3O60493 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SNX3O60493 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC18.35■□□□□ 0.53
SNX3O60493 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
SNX3O60493 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC18.35■□□□□ 0.53
SNX3O60493 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
SNX3O60493 AC006116.8-202ENST00000587620 1550 ntBASIC18.35■□□□□ 0.53
SNX3O60493 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
SNX3O60493 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
SNX3O60493 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC18.35■□□□□ 0.53
SNX3O60493 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC18.35■□□□□ 0.53
SNX3O60493 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SNX3O60493 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SNX3O60493 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SNX3O60493 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC18.35■□□□□ 0.53
SNX3O60493 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SNX3O60493 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
SNX3O60493 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
SNX3O60493 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 54.2 ms