Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
HDAC3O15379 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC18.18■□□□□ 0.5
HDAC3O15379 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC18.18■□□□□ 0.5
HDAC3O15379 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
HDAC3O15379 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC18.18■□□□□ 0.5
HDAC3O15379 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
HDAC3O15379 AC138028.4-201ENST00000564984 1845 ntBASIC18.18■□□□□ 0.5
HDAC3O15379 AL357033.4-201ENST00000617703 1807 ntBASIC18.18■□□□□ 0.5
HDAC3O15379 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
HDAC3O15379 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HDAC3O15379 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
HDAC3O15379 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC18.18■□□□□ 0.5
HDAC3O15379 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
HDAC3O15379 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HDAC3O15379 FLYWCH1P1-201ENST00000460917 1874 ntBASIC18.18■□□□□ 0.5
HDAC3O15379 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC18.18■□□□□ 0.5
HDAC3O15379 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
HDAC3O15379 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HDAC3O15379 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
HDAC3O15379 LINC00896-202ENST00000609602 2128 ntBASIC18.17■□□□□ 0.5
HDAC3O15379 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
HDAC3O15379 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HDAC3O15379 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
HDAC3O15379 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
HDAC3O15379 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
HDAC3O15379 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC18.17■□□□□ 0.5
HDAC3O15379 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
HDAC3O15379 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HDAC3O15379 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HDAC3O15379 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC18.17■□□□□ 0.5
HDAC3O15379 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
HDAC3O15379 Z85996.1-201ENST00000494644 937 ntBASIC18.17■□□□□ 0.5
HDAC3O15379 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC18.17■□□□□ 0.5
HDAC3O15379 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HDAC3O15379 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC18.17■□□□□ 0.5
HDAC3O15379 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HDAC3O15379 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
HDAC3O15379 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
HDAC3O15379 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
HDAC3O15379 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
HDAC3O15379 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
HDAC3O15379 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC18.17■□□□□ 0.5
HDAC3O15379 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC18.17■□□□□ 0.5
HDAC3O15379 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC18.17■□□□□ 0.5
HDAC3O15379 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
HDAC3O15379 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC18.17■□□□□ 0.5
HDAC3O15379 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HDAC3O15379 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HDAC3O15379 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC18.17■□□□□ 0.5
HDAC3O15379 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
HDAC3O15379 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HDAC3O15379 KRT8P11-201ENST00000409686 1436 ntBASIC18.16■□□□□ 0.5
HDAC3O15379 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HDAC3O15379 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
HDAC3O15379 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC18.16■□□□□ 0.5
HDAC3O15379 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HDAC3O15379 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
HDAC3O15379 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HDAC3O15379 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC18.16■□□□□ 0.5
HDAC3O15379 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC18.16■□□□□ 0.5
HDAC3O15379 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
HDAC3O15379 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
HDAC3O15379 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC18.16■□□□□ 0.5
HDAC3O15379 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC18.16■□□□□ 0.5
HDAC3O15379 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC18.16■□□□□ 0.5
HDAC3O15379 AC098934.4-201ENST00000564127 592 ntBASIC18.16■□□□□ 0.5
HDAC3O15379 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
HDAC3O15379 INO80E-214ENST00000620599 515 ntTSL 2 BASIC18.16■□□□□ 0.5
HDAC3O15379 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
HDAC3O15379 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC18.16■□□□□ 0.5
HDAC3O15379 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
HDAC3O15379 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
HDAC3O15379 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HDAC3O15379 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
HDAC3O15379 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HDAC3O15379 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
HDAC3O15379 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC18.16■□□□□ 0.5
HDAC3O15379 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC18.16■□□□□ 0.5
HDAC3O15379 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC18.15■□□□□ 0.5
HDAC3O15379 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
HDAC3O15379 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HDAC3O15379 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC18.15■□□□□ 0.5
HDAC3O15379 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HDAC3O15379 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
HDAC3O15379 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC18.15■□□□□ 0.5
HDAC3O15379 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
HDAC3O15379 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HDAC3O15379 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
HDAC3O15379 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
HDAC3O15379 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC18.15■□□□□ 0.5
HDAC3O15379 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HDAC3O15379 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC18.15■□□□□ 0.5
HDAC3O15379 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
HDAC3O15379 PARL-206ENST00000435888 1098 ntTSL 5 BASIC18.15■□□□□ 0.5
HDAC3O15379 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC18.15■□□□□ 0.5
HDAC3O15379 GLI3-203ENST00000437480 451 ntTSL 2 BASIC18.15■□□□□ 0.5
HDAC3O15379 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC18.15■□□□□ 0.5
HDAC3O15379 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC18.15■□□□□ 0.5
HDAC3O15379 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC18.15■□□□□ 0.5
HDAC3O15379 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms