Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC15.2■□□□□ 0.02
TRAV40A0A0B4J280 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
TRAV40A0A0B4J280 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC15.2■□□□□ 0.02
TRAV40A0A0B4J280 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC15.2■□□□□ 0.02
TRAV40A0A0B4J280 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
TRAV40A0A0B4J280 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
TRAV40A0A0B4J280 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC15.2■□□□□ 0.02
TRAV40A0A0B4J280 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC15.2■□□□□ 0.02
TRAV40A0A0B4J280 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
TRAV40A0A0B4J280 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
TRAV40A0A0B4J280 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
TRAV40A0A0B4J280 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
TRAV40A0A0B4J280 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
TRAV40A0A0B4J280 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
TRAV40A0A0B4J280 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
TRAV40A0A0B4J280 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
TRAV40A0A0B4J280 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
TRAV40A0A0B4J280 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
TRAV40A0A0B4J280 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
TRAV40A0A0B4J280 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC15.19■□□□□ 0.02
TRAV40A0A0B4J280 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
TRAV40A0A0B4J280 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
TRAV40A0A0B4J280 SPDYE13P-201ENST00000445314 798 ntBASIC15.19■□□□□ 0.02
TRAV40A0A0B4J280 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC15.19■□□□□ 0.02
TRAV40A0A0B4J280 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC15.19■□□□□ 0.02
TRAV40A0A0B4J280 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC15.19■□□□□ 0.02
TRAV40A0A0B4J280 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC15.19■□□□□ 0.02
TRAV40A0A0B4J280 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
TRAV40A0A0B4J280 AL157888.1-201ENST00000631930 593 ntBASIC15.19■□□□□ 0.02
TRAV40A0A0B4J280 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
TRAV40A0A0B4J280 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
TRAV40A0A0B4J280 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC15.19■□□□□ 0.02
TRAV40A0A0B4J280 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
TRAV40A0A0B4J280 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
TRAV40A0A0B4J280 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
TRAV40A0A0B4J280 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC15.19■□□□□ 0.02
TRAV40A0A0B4J280 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC15.19■□□□□ 0.02
TRAV40A0A0B4J280 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
TRAV40A0A0B4J280 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
TRAV40A0A0B4J280 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
TRAV40A0A0B4J280 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
TRAV40A0A0B4J280 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TRAV40A0A0B4J280 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
TRAV40A0A0B4J280 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
TRAV40A0A0B4J280 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TRAV40A0A0B4J280 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TRAV40A0A0B4J280 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TRAV40A0A0B4J280 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC15.18■□□□□ 0.02
TRAV40A0A0B4J280 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
TRAV40A0A0B4J280 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TRAV40A0A0B4J280 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC15.18■□□□□ 0.02
TRAV40A0A0B4J280 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TRAV40A0A0B4J280 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC15.18■□□□□ 0.02
TRAV40A0A0B4J280 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC15.18■□□□□ 0.02
TRAV40A0A0B4J280 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
TRAV40A0A0B4J280 MIR3917-201ENST00000580971 93 ntBASIC15.18■□□□□ 0.02
TRAV40A0A0B4J280 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
TRAV40A0A0B4J280 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC15.18■□□□□ 0.02
TRAV40A0A0B4J280 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TRAV40A0A0B4J280 KRT8P32-201ENST00000512863 1461 ntBASIC15.18■□□□□ 0.02
TRAV40A0A0B4J280 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC15.18■□□□□ 0.02
TRAV40A0A0B4J280 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC15.18■□□□□ 0.02
TRAV40A0A0B4J280 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
TRAV40A0A0B4J280 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC15.18■□□□□ 0.02
TRAV40A0A0B4J280 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC15.18■□□□□ 0.02
TRAV40A0A0B4J280 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TRAV40A0A0B4J280 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC15.18■□□□□ 0.02
TRAV40A0A0B4J280 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TRAV40A0A0B4J280 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC15.18■□□□□ 0.02
TRAV40A0A0B4J280 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
TRAV40A0A0B4J280 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC15.17■□□□□ 0.02
TRAV40A0A0B4J280 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
TRAV40A0A0B4J280 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
TRAV40A0A0B4J280 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC15.17■□□□□ 0.02
TRAV40A0A0B4J280 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
TRAV40A0A0B4J280 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
TRAV40A0A0B4J280 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
TRAV40A0A0B4J280 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC15.17■□□□□ 0.02
TRAV40A0A0B4J280 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
TRAV40A0A0B4J280 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC15.17■□□□□ 0.02
TRAV40A0A0B4J280 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC15.17■□□□□ 0.02
TRAV40A0A0B4J280 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
TRAV40A0A0B4J280 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC15.17■□□□□ 0.02
TRAV40A0A0B4J280 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC15.17■□□□□ 0.02
TRAV40A0A0B4J280 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC15.17■□□□□ 0.02
TRAV40A0A0B4J280 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
TRAV40A0A0B4J280 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
TRAV40A0A0B4J280 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC15.17■□□□□ 0.02
TRAV40A0A0B4J280 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC15.17■□□□□ 0.02
TRAV40A0A0B4J280 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
TRAV40A0A0B4J280 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
TRAV40A0A0B4J280 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC15.17■□□□□ 0.02
TRAV40A0A0B4J280 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC15.17■□□□□ 0.02
TRAV40A0A0B4J280 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC15.17■□□□□ 0.02
TRAV40A0A0B4J280 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC15.17■□□□□ 0.02
TRAV40A0A0B4J280 AL136038.4-201ENST00000603606 1261 ntBASIC15.17■□□□□ 0.02
TRAV40A0A0B4J280 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC15.17■□□□□ 0.02
TRAV40A0A0B4J280 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
TRAV40A0A0B4J280 MCC-208ENST00000514701 2855 ntTSL 2 BASIC15.17■□□□□ 0.02
TRAV40A0A0B4J280 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms