Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC19.21■□□□□ 0.67
VPS28Q9UK41 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC19.21■□□□□ 0.67
VPS28Q9UK41 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC19.21■□□□□ 0.67
VPS28Q9UK41 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC19.21■□□□□ 0.67
VPS28Q9UK41 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
VPS28Q9UK41 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
VPS28Q9UK41 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC19.21■□□□□ 0.67
VPS28Q9UK41 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
VPS28Q9UK41 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
VPS28Q9UK41 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
VPS28Q9UK41 AP000523.1-201ENST00000398242 1049 ntBASIC19.21■□□□□ 0.67
VPS28Q9UK41 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC19.21■□□□□ 0.67
VPS28Q9UK41 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
VPS28Q9UK41 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC19.21■□□□□ 0.67
VPS28Q9UK41 YBX1P2-201ENST00000489612 999 ntBASIC19.21■□□□□ 0.67
VPS28Q9UK41 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC19.21■□□□□ 0.67
VPS28Q9UK41 WWOX-216ENST00000569818 525 ntBASIC19.21■□□□□ 0.67
VPS28Q9UK41 NT5C-210ENST00000582160 860 ntTSL 2 BASIC19.21■□□□□ 0.67
VPS28Q9UK41 MIR3180-5-201ENST00000583743 153 ntBASIC19.21■□□□□ 0.67
VPS28Q9UK41 AC140113.3-201ENST00000605663 199 ntBASIC19.21■□□□□ 0.67
VPS28Q9UK41 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
VPS28Q9UK41 AL023973.1-201ENST00000624619 620 ntBASIC19.21■□□□□ 0.67
VPS28Q9UK41 AL031432.5-201ENST00000641059 760 ntBASIC19.21■□□□□ 0.67
VPS28Q9UK41 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC19.21■□□□□ 0.67
VPS28Q9UK41 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
VPS28Q9UK41 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC19.21■□□□□ 0.67
VPS28Q9UK41 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
VPS28Q9UK41 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC19.21■□□□□ 0.67
VPS28Q9UK41 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
VPS28Q9UK41 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
VPS28Q9UK41 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
VPS28Q9UK41 AL049812.1-201ENST00000432563 2267 ntBASIC19.21■□□□□ 0.67
VPS28Q9UK41 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC19.21■□□□□ 0.67
VPS28Q9UK41 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
VPS28Q9UK41 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
VPS28Q9UK41 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC19.2■□□□□ 0.66
VPS28Q9UK41 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC19.2■□□□□ 0.66
VPS28Q9UK41 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
VPS28Q9UK41 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC19.2■□□□□ 0.66
VPS28Q9UK41 ILF2-202ENST00000368681 726 ntTSL 2 BASIC19.2■□□□□ 0.66
VPS28Q9UK41 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC19.2■□□□□ 0.66
VPS28Q9UK41 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC19.2■□□□□ 0.66
VPS28Q9UK41 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC19.2■□□□□ 0.66
VPS28Q9UK41 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC19.2■□□□□ 0.66
VPS28Q9UK41 AL590326.2-201ENST00000625139 305 ntBASIC19.2■□□□□ 0.66
VPS28Q9UK41 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC19.2■□□□□ 0.66
VPS28Q9UK41 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
VPS28Q9UK41 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC19.2■□□□□ 0.66
VPS28Q9UK41 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
VPS28Q9UK41 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC19.2■□□□□ 0.66
VPS28Q9UK41 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC19.2■□□□□ 0.66
VPS28Q9UK41 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
VPS28Q9UK41 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
VPS28Q9UK41 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
VPS28Q9UK41 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC19.19■□□□□ 0.66
VPS28Q9UK41 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
VPS28Q9UK41 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC19.19■□□□□ 0.66
VPS28Q9UK41 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
VPS28Q9UK41 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
VPS28Q9UK41 RNF152P1-201ENST00000397754 604 ntBASIC19.19■□□□□ 0.66
VPS28Q9UK41 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
VPS28Q9UK41 NEK4P2-201ENST00000580004 1012 ntBASIC19.19■□□□□ 0.66
VPS28Q9UK41 AC011558.1-201ENST00000623459 338 ntBASIC19.19■□□□□ 0.66
VPS28Q9UK41 KRT8P32-201ENST00000512863 1461 ntBASIC19.19■□□□□ 0.66
VPS28Q9UK41 AL109659.2-201ENST00000606809 1674 ntBASIC19.19■□□□□ 0.66
VPS28Q9UK41 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC19.19■□□□□ 0.66
VPS28Q9UK41 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC19.19■□□□□ 0.66
VPS28Q9UK41 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
VPS28Q9UK41 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
VPS28Q9UK41 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
VPS28Q9UK41 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
VPS28Q9UK41 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
VPS28Q9UK41 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
VPS28Q9UK41 AC008556.1-201ENST00000610908 2040 ntBASIC19.18■□□□□ 0.66
VPS28Q9UK41 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC19.18■□□□□ 0.66
VPS28Q9UK41 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
VPS28Q9UK41 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
VPS28Q9UK41 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
VPS28Q9UK41 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
VPS28Q9UK41 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
VPS28Q9UK41 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC19.18■□□□□ 0.66
VPS28Q9UK41 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
VPS28Q9UK41 ENSA-205ENST00000361532 792 ntTSL 2 BASIC19.18■□□□□ 0.66
VPS28Q9UK41 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
VPS28Q9UK41 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC19.18■□□□□ 0.66
VPS28Q9UK41 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC19.18■□□□□ 0.66
VPS28Q9UK41 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC19.18■□□□□ 0.66
VPS28Q9UK41 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC19.18■□□□□ 0.66
VPS28Q9UK41 NME3-204ENST00000563498 920 ntTSL 2 BASIC19.18■□□□□ 0.66
VPS28Q9UK41 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC19.18■□□□□ 0.66
VPS28Q9UK41 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC19.18■□□□□ 0.66
VPS28Q9UK41 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC19.18■□□□□ 0.66
VPS28Q9UK41 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
VPS28Q9UK41 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC19.18■□□□□ 0.66
VPS28Q9UK41 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
VPS28Q9UK41 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC19.18■□□□□ 0.66
VPS28Q9UK41 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
VPS28Q9UK41 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC19.18■□□□□ 0.66
VPS28Q9UK41 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
VPS28Q9UK41 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 21.1 ms