Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
LIMD1Q9UGP4 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC19.46■□□□□ 0.71
LIMD1Q9UGP4 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
LIMD1Q9UGP4 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
LIMD1Q9UGP4 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
LIMD1Q9UGP4 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
LIMD1Q9UGP4 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
LIMD1Q9UGP4 KRT16P4-201ENST00000453883 522 ntBASIC19.46■□□□□ 0.71
LIMD1Q9UGP4 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC19.46■□□□□ 0.71
LIMD1Q9UGP4 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC19.46■□□□□ 0.71
LIMD1Q9UGP4 AC120114.3-201ENST00000611923 658 ntBASIC19.46■□□□□ 0.71
LIMD1Q9UGP4 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
LIMD1Q9UGP4 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
LIMD1Q9UGP4 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC19.46■□□□□ 0.71
LIMD1Q9UGP4 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC19.46■□□□□ 0.71
LIMD1Q9UGP4 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC19.46■□□□□ 0.71
LIMD1Q9UGP4 Z83836.1-201ENST00000624605 1642 ntBASIC19.46■□□□□ 0.71
LIMD1Q9UGP4 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
LIMD1Q9UGP4 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
LIMD1Q9UGP4 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC19.46■□□□□ 0.71
LIMD1Q9UGP4 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
LIMD1Q9UGP4 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
LIMD1Q9UGP4 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC19.46■□□□□ 0.71
LIMD1Q9UGP4 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
LIMD1Q9UGP4 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
LIMD1Q9UGP4 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC19.45■□□□□ 0.7
LIMD1Q9UGP4 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
LIMD1Q9UGP4 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
LIMD1Q9UGP4 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
LIMD1Q9UGP4 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
LIMD1Q9UGP4 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC19.45■□□□□ 0.7
LIMD1Q9UGP4 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
LIMD1Q9UGP4 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
LIMD1Q9UGP4 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
LIMD1Q9UGP4 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
LIMD1Q9UGP4 AC074051.2-201ENST00000565115 352 ntBASIC19.45■□□□□ 0.7
LIMD1Q9UGP4 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC19.45■□□□□ 0.7
LIMD1Q9UGP4 IGHV3-41-201ENST00000613121 348 ntBASIC19.45■□□□□ 0.7
LIMD1Q9UGP4 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
LIMD1Q9UGP4 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
LIMD1Q9UGP4 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC19.45■□□□□ 0.7
LIMD1Q9UGP4 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
LIMD1Q9UGP4 HLA-A-201ENST00000376802 1334 ntBASIC19.45■□□□□ 0.7
LIMD1Q9UGP4 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC19.45■□□□□ 0.7
LIMD1Q9UGP4 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
LIMD1Q9UGP4 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC19.45■□□□□ 0.7
LIMD1Q9UGP4 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
LIMD1Q9UGP4 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC19.45■□□□□ 0.7
LIMD1Q9UGP4 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
LIMD1Q9UGP4 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
LIMD1Q9UGP4 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC19.44■□□□□ 0.7
LIMD1Q9UGP4 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
LIMD1Q9UGP4 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
LIMD1Q9UGP4 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
LIMD1Q9UGP4 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
LIMD1Q9UGP4 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC19.44■□□□□ 0.7
LIMD1Q9UGP4 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC19.44■□□□□ 0.7
LIMD1Q9UGP4 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
LIMD1Q9UGP4 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC19.44■□□□□ 0.7
LIMD1Q9UGP4 TEX30-205ENST00000376029 959 ntTSL 2 BASIC19.44■□□□□ 0.7
LIMD1Q9UGP4 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
LIMD1Q9UGP4 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
LIMD1Q9UGP4 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
LIMD1Q9UGP4 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
LIMD1Q9UGP4 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
LIMD1Q9UGP4 UBC-206ENST00000538617 1303 ntTSL 5 BASIC19.44■□□□□ 0.7
LIMD1Q9UGP4 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
LIMD1Q9UGP4 AL512408.1-201ENST00000569378 2000 ntBASIC19.44■□□□□ 0.7
LIMD1Q9UGP4 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
LIMD1Q9UGP4 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
LIMD1Q9UGP4 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
LIMD1Q9UGP4 LINC00167-201ENST00000530583 1419 ntBASIC19.43■□□□□ 0.7
LIMD1Q9UGP4 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC19.43■□□□□ 0.7
LIMD1Q9UGP4 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC19.43■□□□□ 0.7
LIMD1Q9UGP4 ZNF815P-204ENST00000434898 1737 ntBASIC19.43■□□□□ 0.7
LIMD1Q9UGP4 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
LIMD1Q9UGP4 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
LIMD1Q9UGP4 USP39-204ENST00000409766 2033 ntTSL 2 BASIC19.43■□□□□ 0.7
LIMD1Q9UGP4 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
LIMD1Q9UGP4 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
LIMD1Q9UGP4 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC19.43■□□□□ 0.7
LIMD1Q9UGP4 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC19.43■□□□□ 0.7
LIMD1Q9UGP4 AL590627.1-203ENST00000421194 1026 ntBASIC19.43■□□□□ 0.7
LIMD1Q9UGP4 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC19.43■□□□□ 0.7
LIMD1Q9UGP4 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC19.43■□□□□ 0.7
LIMD1Q9UGP4 AL671883.3-201ENST00000603274 991 ntBASIC19.43■□□□□ 0.7
LIMD1Q9UGP4 AL353801.3-201ENST00000609898 542 ntBASIC19.43■□□□□ 0.7
LIMD1Q9UGP4 BX640515.1-201ENST00000617215 977 ntBASIC19.43■□□□□ 0.7
LIMD1Q9UGP4 AC139530.3-201ENST00000620344 690 ntBASIC19.43■□□□□ 0.7
LIMD1Q9UGP4 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
LIMD1Q9UGP4 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC19.43■□□□□ 0.7
LIMD1Q9UGP4 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC19.43■□□□□ 0.7
LIMD1Q9UGP4 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
LIMD1Q9UGP4 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
LIMD1Q9UGP4 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
LIMD1Q9UGP4 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
LIMD1Q9UGP4 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC19.42■□□□□ 0.7
LIMD1Q9UGP4 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC19.42■□□□□ 0.7
LIMD1Q9UGP4 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
LIMD1Q9UGP4 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms