Protein–RNA interactions for Protein: Q9NZC9

SMARCAL1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1, humanhuman

Predictions only

Length 954 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCAL1Q9NZC9 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC19.68■□□□□ 0.74
SMARCAL1Q9NZC9 LINC00896-202ENST00000609602 2128 ntBASIC19.68■□□□□ 0.74
SMARCAL1Q9NZC9 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SMARCAL1Q9NZC9 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SMARCAL1Q9NZC9 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
SMARCAL1Q9NZC9 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC19.68■□□□□ 0.74
SMARCAL1Q9NZC9 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
SMARCAL1Q9NZC9 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
SMARCAL1Q9NZC9 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
SMARCAL1Q9NZC9 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SMARCAL1Q9NZC9 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SMARCAL1Q9NZC9 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC19.68■□□□□ 0.74
SMARCAL1Q9NZC9 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SMARCAL1Q9NZC9 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SMARCAL1Q9NZC9 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
SMARCAL1Q9NZC9 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
SMARCAL1Q9NZC9 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
SMARCAL1Q9NZC9 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
SMARCAL1Q9NZC9 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC19.67■□□□□ 0.74
SMARCAL1Q9NZC9 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SMARCAL1Q9NZC9 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC19.67■□□□□ 0.74
SMARCAL1Q9NZC9 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
SMARCAL1Q9NZC9 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
SMARCAL1Q9NZC9 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC19.67■□□□□ 0.74
SMARCAL1Q9NZC9 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
SMARCAL1Q9NZC9 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
SMARCAL1Q9NZC9 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC19.67■□□□□ 0.74
SMARCAL1Q9NZC9 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
SMARCAL1Q9NZC9 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC19.67■□□□□ 0.74
SMARCAL1Q9NZC9 THEM4-205ENST00000489410 643 ntTSL 2 BASIC19.67■□□□□ 0.74
SMARCAL1Q9NZC9 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC19.67■□□□□ 0.74
SMARCAL1Q9NZC9 KRT18P6-201ENST00000555540 1265 ntBASIC19.67■□□□□ 0.74
SMARCAL1Q9NZC9 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC19.67■□□□□ 0.74
SMARCAL1Q9NZC9 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC19.67■□□□□ 0.74
SMARCAL1Q9NZC9 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC19.67■□□□□ 0.74
SMARCAL1Q9NZC9 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC19.67■□□□□ 0.74
SMARCAL1Q9NZC9 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC19.67■□□□□ 0.74
SMARCAL1Q9NZC9 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SMARCAL1Q9NZC9 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
SMARCAL1Q9NZC9 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
SMARCAL1Q9NZC9 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
SMARCAL1Q9NZC9 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC19.67■□□□□ 0.74
SMARCAL1Q9NZC9 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC19.67■□□□□ 0.74
SMARCAL1Q9NZC9 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC19.67■□□□□ 0.74
SMARCAL1Q9NZC9 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC19.67■□□□□ 0.74
SMARCAL1Q9NZC9 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SMARCAL1Q9NZC9 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC19.67■□□□□ 0.74
SMARCAL1Q9NZC9 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
SMARCAL1Q9NZC9 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC19.66■□□□□ 0.74
SMARCAL1Q9NZC9 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
SMARCAL1Q9NZC9 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SMARCAL1Q9NZC9 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC19.66■□□□□ 0.74
SMARCAL1Q9NZC9 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SMARCAL1Q9NZC9 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SMARCAL1Q9NZC9 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC19.66■□□□□ 0.74
SMARCAL1Q9NZC9 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC19.66■□□□□ 0.74
SMARCAL1Q9NZC9 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC19.66■□□□□ 0.74
SMARCAL1Q9NZC9 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SMARCAL1Q9NZC9 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
SMARCAL1Q9NZC9 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SMARCAL1Q9NZC9 AC068587.9-201ENST00000641814 219 ntBASIC19.66■□□□□ 0.74
SMARCAL1Q9NZC9 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SMARCAL1Q9NZC9 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SMARCAL1Q9NZC9 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC19.66■□□□□ 0.74
SMARCAL1Q9NZC9 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
SMARCAL1Q9NZC9 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC19.66■□□□□ 0.74
SMARCAL1Q9NZC9 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
SMARCAL1Q9NZC9 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SMARCAL1Q9NZC9 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
SMARCAL1Q9NZC9 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC19.66■□□□□ 0.74
SMARCAL1Q9NZC9 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC19.66■□□□□ 0.74
SMARCAL1Q9NZC9 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC19.66■□□□□ 0.74
SMARCAL1Q9NZC9 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SMARCAL1Q9NZC9 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC19.65■□□□□ 0.74
SMARCAL1Q9NZC9 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
SMARCAL1Q9NZC9 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SMARCAL1Q9NZC9 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SMARCAL1Q9NZC9 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SMARCAL1Q9NZC9 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SMARCAL1Q9NZC9 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SMARCAL1Q9NZC9 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC19.65■□□□□ 0.74
SMARCAL1Q9NZC9 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
SMARCAL1Q9NZC9 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC19.65■□□□□ 0.74
SMARCAL1Q9NZC9 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SMARCAL1Q9NZC9 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC19.65■□□□□ 0.74
SMARCAL1Q9NZC9 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC19.65■□□□□ 0.74
SMARCAL1Q9NZC9 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC19.65■□□□□ 0.74
SMARCAL1Q9NZC9 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC19.65■□□□□ 0.74
SMARCAL1Q9NZC9 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
SMARCAL1Q9NZC9 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC19.65■□□□□ 0.74
SMARCAL1Q9NZC9 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
SMARCAL1Q9NZC9 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC19.65■□□□□ 0.74
SMARCAL1Q9NZC9 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SMARCAL1Q9NZC9 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SMARCAL1Q9NZC9 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC19.65■□□□□ 0.74
SMARCAL1Q9NZC9 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
SMARCAL1Q9NZC9 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC19.65■□□□□ 0.74
SMARCAL1Q9NZC9 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SMARCAL1Q9NZC9 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC19.65■□□□□ 0.74
SMARCAL1Q9NZC9 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms