Protein–RNA interactions for Protein: Q9NQG7

HPS4, Hermansky-Pudlak syndrome 4 protein, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4Q9NQG7 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
HPS4Q9NQG7 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
HPS4Q9NQG7 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
HPS4Q9NQG7 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
HPS4Q9NQG7 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
HPS4Q9NQG7 STX6-204ENST00000542060 4809 ntTSL 2 BASIC19.31■□□□□ 0.68
HPS4Q9NQG7 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC19.31■□□□□ 0.68
HPS4Q9NQG7 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
HPS4Q9NQG7 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
HPS4Q9NQG7 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
HPS4Q9NQG7 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
HPS4Q9NQG7 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
HPS4Q9NQG7 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
HPS4Q9NQG7 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC19.3■□□□□ 0.68
HPS4Q9NQG7 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC19.3■□□□□ 0.68
HPS4Q9NQG7 HLA-F-220ENST00000434407 884 ntBASIC19.3■□□□□ 0.68
HPS4Q9NQG7 TSSC2-201ENST00000450217 709 ntBASIC19.3■□□□□ 0.68
HPS4Q9NQG7 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC19.3■□□□□ 0.68
HPS4Q9NQG7 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC19.3■□□□□ 0.68
HPS4Q9NQG7 MIR3180-1-201ENST00000580374 94 ntBASIC19.3■□□□□ 0.68
HPS4Q9NQG7 MIR3180-3-201ENST00000584616 94 ntBASIC19.3■□□□□ 0.68
HPS4Q9NQG7 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
HPS4Q9NQG7 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
HPS4Q9NQG7 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC19.3■□□□□ 0.68
HPS4Q9NQG7 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
HPS4Q9NQG7 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC19.3■□□□□ 0.68
HPS4Q9NQG7 AL020996.1-203ENST00000536896 2307 ntBASIC19.3■□□□□ 0.68
HPS4Q9NQG7 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC19.3■□□□□ 0.68
HPS4Q9NQG7 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
HPS4Q9NQG7 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
HPS4Q9NQG7 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
HPS4Q9NQG7 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
HPS4Q9NQG7 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
HPS4Q9NQG7 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
HPS4Q9NQG7 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
HPS4Q9NQG7 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
HPS4Q9NQG7 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
HPS4Q9NQG7 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC19.29■□□□□ 0.68
HPS4Q9NQG7 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
HPS4Q9NQG7 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
HPS4Q9NQG7 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
HPS4Q9NQG7 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC19.29■□□□□ 0.68
HPS4Q9NQG7 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
HPS4Q9NQG7 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
HPS4Q9NQG7 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
HPS4Q9NQG7 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
HPS4Q9NQG7 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
HPS4Q9NQG7 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC19.29■□□□□ 0.68
HPS4Q9NQG7 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC19.29■□□□□ 0.68
HPS4Q9NQG7 AP002383.4-201ENST00000442518 975 ntBASIC19.29■□□□□ 0.68
HPS4Q9NQG7 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC19.29■□□□□ 0.68
HPS4Q9NQG7 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC19.29■□□□□ 0.68
HPS4Q9NQG7 MIR3917-201ENST00000580971 93 ntBASIC19.29■□□□□ 0.68
HPS4Q9NQG7 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC19.29■□□□□ 0.68
HPS4Q9NQG7 AC092329.2-201ENST00000598402 547 ntBASIC19.29■□□□□ 0.68
HPS4Q9NQG7 AL121672.3-201ENST00000608644 468 ntBASIC19.29■□□□□ 0.68
HPS4Q9NQG7 WDR6-223ENST00000627177 207 ntTSL 2 BASIC19.29■□□□□ 0.68
HPS4Q9NQG7 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC19.29■□□□□ 0.68
HPS4Q9NQG7 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
HPS4Q9NQG7 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
HPS4Q9NQG7 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
HPS4Q9NQG7 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC19.29■□□□□ 0.68
HPS4Q9NQG7 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
HPS4Q9NQG7 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC19.29■□□□□ 0.68
HPS4Q9NQG7 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
HPS4Q9NQG7 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
HPS4Q9NQG7 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC19.29■□□□□ 0.68
HPS4Q9NQG7 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
HPS4Q9NQG7 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC19.29■□□□□ 0.68
HPS4Q9NQG7 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
HPS4Q9NQG7 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
HPS4Q9NQG7 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC19.28■□□□□ 0.68
HPS4Q9NQG7 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HPS4Q9NQG7 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
HPS4Q9NQG7 AL162741.1-201ENST00000565563 1558 ntBASIC19.28■□□□□ 0.68
HPS4Q9NQG7 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC19.28■□□□□ 0.68
HPS4Q9NQG7 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
HPS4Q9NQG7 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC19.28■□□□□ 0.68
HPS4Q9NQG7 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
HPS4Q9NQG7 BX276092.5-203ENST00000456199 560 ntBASIC19.28■□□□□ 0.68
HPS4Q9NQG7 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC19.28■□□□□ 0.68
HPS4Q9NQG7 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC19.28■□□□□ 0.68
HPS4Q9NQG7 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC19.28■□□□□ 0.68
HPS4Q9NQG7 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC19.28■□□□□ 0.68
HPS4Q9NQG7 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC19.28■□□□□ 0.68
HPS4Q9NQG7 IRF5-214ENST00000613821 595 ntTSL 5 BASIC19.28■□□□□ 0.68
HPS4Q9NQG7 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
HPS4Q9NQG7 VPS72-207ENST00000640458 689 ntTSL 5 BASIC19.28■□□□□ 0.68
HPS4Q9NQG7 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
HPS4Q9NQG7 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HPS4Q9NQG7 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC19.28■□□□□ 0.68
HPS4Q9NQG7 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC19.28■□□□□ 0.68
HPS4Q9NQG7 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HPS4Q9NQG7 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
HPS4Q9NQG7 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC19.28■□□□□ 0.68
HPS4Q9NQG7 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC19.28■□□□□ 0.68
HPS4Q9NQG7 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HPS4Q9NQG7 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
HPS4Q9NQG7 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC19.28■□□□□ 0.68
HPS4Q9NQG7 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms