Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC20.07■□□□□ 0.8
SIX2Q9NPC8 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
SIX2Q9NPC8 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC20.06■□□□□ 0.8
SIX2Q9NPC8 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
SIX2Q9NPC8 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SIX2Q9NPC8 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
SIX2Q9NPC8 ABALON-201ENST00000629058 1903 ntBASIC20.06■□□□□ 0.8
SIX2Q9NPC8 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC20.06■□□□□ 0.8
SIX2Q9NPC8 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
SIX2Q9NPC8 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SIX2Q9NPC8 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
SIX2Q9NPC8 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
SIX2Q9NPC8 AL390955.1-201ENST00000428694 934 ntBASIC20.06■□□□□ 0.8
SIX2Q9NPC8 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC20.06■□□□□ 0.8
SIX2Q9NPC8 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
SIX2Q9NPC8 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC20.06■□□□□ 0.8
SIX2Q9NPC8 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC20.06■□□□□ 0.8
SIX2Q9NPC8 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC20.06■□□□□ 0.8
SIX2Q9NPC8 AL162741.1-201ENST00000565563 1558 ntBASIC20.06■□□□□ 0.8
SIX2Q9NPC8 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SIX2Q9NPC8 GRAMD4P8-201ENST00000605465 1115 ntBASIC20.06■□□□□ 0.8
SIX2Q9NPC8 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SIX2Q9NPC8 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
SIX2Q9NPC8 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SIX2Q9NPC8 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
SIX2Q9NPC8 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
SIX2Q9NPC8 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
SIX2Q9NPC8 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC20.06■□□□□ 0.8
SIX2Q9NPC8 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SIX2Q9NPC8 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
SIX2Q9NPC8 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
SIX2Q9NPC8 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC20.06■□□□□ 0.8
SIX2Q9NPC8 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC20.06■□□□□ 0.8
SIX2Q9NPC8 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SIX2Q9NPC8 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC20.05■□□□□ 0.8
SIX2Q9NPC8 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SIX2Q9NPC8 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC20.05■□□□□ 0.8
SIX2Q9NPC8 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
SIX2Q9NPC8 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SIX2Q9NPC8 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SIX2Q9NPC8 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
SIX2Q9NPC8 MIR718-201ENST00000390190 70 ntBASIC20.05■□□□□ 0.8
SIX2Q9NPC8 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC20.05■□□□□ 0.8
SIX2Q9NPC8 ELP6-205ENST00000439305 880 ntTSL 2 BASIC20.05■□□□□ 0.8
SIX2Q9NPC8 SNORA78-201ENST00000459373 127 ntBASIC20.05■□□□□ 0.8
SIX2Q9NPC8 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC20.05■□□□□ 0.8
SIX2Q9NPC8 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC20.05■□□□□ 0.8
SIX2Q9NPC8 DHDH-203ENST00000522614 776 ntTSL 5 BASIC20.05■□□□□ 0.8
SIX2Q9NPC8 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC20.05■□□□□ 0.8
SIX2Q9NPC8 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC20.05■□□□□ 0.8
SIX2Q9NPC8 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SIX2Q9NPC8 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC20.05■□□□□ 0.8
SIX2Q9NPC8 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SIX2Q9NPC8 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC20.05■□□□□ 0.8
SIX2Q9NPC8 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SIX2Q9NPC8 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
SIX2Q9NPC8 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
SIX2Q9NPC8 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SIX2Q9NPC8 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SIX2Q9NPC8 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SIX2Q9NPC8 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC20.04■□□□□ 0.8
SIX2Q9NPC8 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SIX2Q9NPC8 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SIX2Q9NPC8 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
SIX2Q9NPC8 KRT8P50-201ENST00000562022 1438 ntBASIC20.04■□□□□ 0.8
SIX2Q9NPC8 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SIX2Q9NPC8 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC20.04■□□□□ 0.8
SIX2Q9NPC8 UNC93B2-201ENST00000285383 730 ntBASIC20.04■□□□□ 0.8
SIX2Q9NPC8 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC20.04■□□□□ 0.8
SIX2Q9NPC8 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC20.04■□□□□ 0.8
SIX2Q9NPC8 TSPY15P-201ENST00000457163 923 ntBASIC20.04■□□□□ 0.8
SIX2Q9NPC8 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC20.04■□□□□ 0.8
SIX2Q9NPC8 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC20.04■□□□□ 0.8
SIX2Q9NPC8 AL355075.4-201ENST00000554988 638 ntBASIC20.04■□□□□ 0.8
SIX2Q9NPC8 FITM1-202ENST00000559294 800 ntBASIC20.04■□□□□ 0.8
SIX2Q9NPC8 MIR4785-201ENST00000585005 73 ntBASIC20.04■□□□□ 0.8
SIX2Q9NPC8 AC135776.1-201ENST00000319817 2481 ntBASIC20.04■□□□□ 0.8
SIX2Q9NPC8 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
SIX2Q9NPC8 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SIX2Q9NPC8 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC20.04■□□□□ 0.8
SIX2Q9NPC8 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC20.04■□□□□ 0.8
SIX2Q9NPC8 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SIX2Q9NPC8 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
SIX2Q9NPC8 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SIX2Q9NPC8 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
SIX2Q9NPC8 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC20.03■□□□□ 0.8
SIX2Q9NPC8 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC20.03■□□□□ 0.8
SIX2Q9NPC8 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
SIX2Q9NPC8 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
SIX2Q9NPC8 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
SIX2Q9NPC8 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SIX2Q9NPC8 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
SIX2Q9NPC8 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC20.03■□□□□ 0.8
SIX2Q9NPC8 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC20.03■□□□□ 0.8
SIX2Q9NPC8 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
SIX2Q9NPC8 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC20.03■□□□□ 0.8
SIX2Q9NPC8 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SIX2Q9NPC8 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SIX2Q9NPC8 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC20.03■□□□□ 0.8
SIX2Q9NPC8 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms