Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC17.96■□□□□ 0.47
CLHC1Q8NHS4 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
CLHC1Q8NHS4 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CLHC1Q8NHS4 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CLHC1Q8NHS4 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
CLHC1Q8NHS4 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CLHC1Q8NHS4 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC17.96■□□□□ 0.47
CLHC1Q8NHS4 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
CLHC1Q8NHS4 DERL1-203ENST00000419562 918 ntTSL 2 BASIC17.96■□□□□ 0.47
CLHC1Q8NHS4 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC17.96■□□□□ 0.47
CLHC1Q8NHS4 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC17.96■□□□□ 0.47
CLHC1Q8NHS4 FDX2-207ENST00000494368 584 ntTSL 4 BASIC17.96■□□□□ 0.47
CLHC1Q8NHS4 GLRB-205ENST00000512619 728 ntTSL 3 BASIC17.96■□□□□ 0.47
CLHC1Q8NHS4 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
CLHC1Q8NHS4 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
CLHC1Q8NHS4 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC17.96■□□□□ 0.47
CLHC1Q8NHS4 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC17.96■□□□□ 0.47
CLHC1Q8NHS4 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CLHC1Q8NHS4 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
CLHC1Q8NHS4 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CLHC1Q8NHS4 NFYC-AS1-201ENST00000606277 1687 ntBASIC17.96■□□□□ 0.47
CLHC1Q8NHS4 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CLHC1Q8NHS4 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC17.96■□□□□ 0.46
CLHC1Q8NHS4 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CLHC1Q8NHS4 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CLHC1Q8NHS4 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
CLHC1Q8NHS4 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CLHC1Q8NHS4 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC17.95■□□□□ 0.46
CLHC1Q8NHS4 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC17.95■□□□□ 0.46
CLHC1Q8NHS4 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CLHC1Q8NHS4 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CLHC1Q8NHS4 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CLHC1Q8NHS4 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
CLHC1Q8NHS4 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC17.95■□□□□ 0.46
CLHC1Q8NHS4 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CLHC1Q8NHS4 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CLHC1Q8NHS4 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC17.95■□□□□ 0.46
CLHC1Q8NHS4 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC17.95■□□□□ 0.46
CLHC1Q8NHS4 CR392000.1-201ENST00000624770 1228 ntBASIC17.95■□□□□ 0.46
CLHC1Q8NHS4 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC17.95■□□□□ 0.46
CLHC1Q8NHS4 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CLHC1Q8NHS4 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC17.95■□□□□ 0.46
CLHC1Q8NHS4 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CLHC1Q8NHS4 MADD-208ENST00000405573 1823 ntTSL 5 BASIC17.95■□□□□ 0.46
CLHC1Q8NHS4 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CLHC1Q8NHS4 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CLHC1Q8NHS4 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CLHC1Q8NHS4 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CLHC1Q8NHS4 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC17.95■□□□□ 0.46
CLHC1Q8NHS4 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CLHC1Q8NHS4 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
CLHC1Q8NHS4 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
CLHC1Q8NHS4 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CLHC1Q8NHS4 CD276-201ENST00000318424 2738 ntTSL 5 BASIC17.94■□□□□ 0.46
CLHC1Q8NHS4 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CLHC1Q8NHS4 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
CLHC1Q8NHS4 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC17.94■□□□□ 0.46
CLHC1Q8NHS4 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC17.94■□□□□ 0.46
CLHC1Q8NHS4 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
CLHC1Q8NHS4 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CLHC1Q8NHS4 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC17.94■□□□□ 0.46
CLHC1Q8NHS4 PPP1R14BP5-201ENST00000440334 435 ntBASIC17.94■□□□□ 0.46
CLHC1Q8NHS4 RPPH1-201ENST00000516869 333 ntBASIC17.94■□□□□ 0.46
CLHC1Q8NHS4 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC17.94■□□□□ 0.46
CLHC1Q8NHS4 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CLHC1Q8NHS4 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CLHC1Q8NHS4 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
CLHC1Q8NHS4 BCL2-203ENST00000589955 5011 ntBASIC17.94■□□□□ 0.46
CLHC1Q8NHS4 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
CLHC1Q8NHS4 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CLHC1Q8NHS4 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC17.94■□□□□ 0.46
CLHC1Q8NHS4 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
CLHC1Q8NHS4 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC17.94■□□□□ 0.46
CLHC1Q8NHS4 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CLHC1Q8NHS4 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CLHC1Q8NHS4 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
CLHC1Q8NHS4 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CLHC1Q8NHS4 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CLHC1Q8NHS4 KRT16P1-201ENST00000399124 1418 ntBASIC17.93■□□□□ 0.46
CLHC1Q8NHS4 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CLHC1Q8NHS4 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC17.93■□□□□ 0.46
CLHC1Q8NHS4 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC17.93■□□□□ 0.46
CLHC1Q8NHS4 KSR1P1-201ENST00000446298 240 ntBASIC17.93■□□□□ 0.46
CLHC1Q8NHS4 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
CLHC1Q8NHS4 AC068587.9-201ENST00000641814 219 ntBASIC17.93■□□□□ 0.46
CLHC1Q8NHS4 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CLHC1Q8NHS4 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
CLHC1Q8NHS4 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CLHC1Q8NHS4 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC17.93■□□□□ 0.46
CLHC1Q8NHS4 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC17.93■□□□□ 0.46
CLHC1Q8NHS4 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CLHC1Q8NHS4 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
CLHC1Q8NHS4 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC17.93■□□□□ 0.46
CLHC1Q8NHS4 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC17.93■□□□□ 0.46
CLHC1Q8NHS4 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CLHC1Q8NHS4 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CLHC1Q8NHS4 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CLHC1Q8NHS4 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CLHC1Q8NHS4 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CLHC1Q8NHS4 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 57.2 ms