Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
HDDC3Q8N4P3 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
HDDC3Q8N4P3 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
HDDC3Q8N4P3 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC18.75■□□□□ 0.59
HDDC3Q8N4P3 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
HDDC3Q8N4P3 AC007952.6-201ENST00000573168 2673 ntBASIC18.75■□□□□ 0.59
HDDC3Q8N4P3 AC003957.1-201ENST00000625108 2673 ntBASIC18.75■□□□□ 0.59
HDDC3Q8N4P3 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
HDDC3Q8N4P3 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
HDDC3Q8N4P3 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
HDDC3Q8N4P3 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC18.74■□□□□ 0.59
HDDC3Q8N4P3 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC18.74■□□□□ 0.59
HDDC3Q8N4P3 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
HDDC3Q8N4P3 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC18.74■□□□□ 0.59
HDDC3Q8N4P3 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
HDDC3Q8N4P3 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC18.74■□□□□ 0.59
HDDC3Q8N4P3 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
HDDC3Q8N4P3 MIR3917-201ENST00000580971 93 ntBASIC18.74■□□□□ 0.59
HDDC3Q8N4P3 NPAP1P7-201ENST00000613027 823 ntBASIC18.74■□□□□ 0.59
HDDC3Q8N4P3 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
HDDC3Q8N4P3 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
HDDC3Q8N4P3 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
HDDC3Q8N4P3 AC093484.2-201ENST00000580996 2166 ntBASIC18.74■□□□□ 0.59
HDDC3Q8N4P3 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC18.73■□□□□ 0.59
HDDC3Q8N4P3 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC18.73■□□□□ 0.59
HDDC3Q8N4P3 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
HDDC3Q8N4P3 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
HDDC3Q8N4P3 AL845331.1-201ENST00000424978 1190 ntBASIC18.73■□□□□ 0.59
HDDC3Q8N4P3 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
HDDC3Q8N4P3 AC079602.3-201ENST00000623931 403 ntBASIC18.73■□□□□ 0.59
HDDC3Q8N4P3 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
HDDC3Q8N4P3 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
HDDC3Q8N4P3 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC18.73■□□□□ 0.59
HDDC3Q8N4P3 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC18.73■□□□□ 0.59
HDDC3Q8N4P3 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
HDDC3Q8N4P3 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
HDDC3Q8N4P3 KRT8P7-201ENST00000533003 1432 ntBASIC18.73■□□□□ 0.59
HDDC3Q8N4P3 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC18.73■□□□□ 0.59
HDDC3Q8N4P3 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
HDDC3Q8N4P3 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
HDDC3Q8N4P3 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
HDDC3Q8N4P3 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
HDDC3Q8N4P3 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
HDDC3Q8N4P3 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC18.72■□□□□ 0.59
HDDC3Q8N4P3 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC18.72■□□□□ 0.59
HDDC3Q8N4P3 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
HDDC3Q8N4P3 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC18.72■□□□□ 0.59
HDDC3Q8N4P3 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
HDDC3Q8N4P3 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
HDDC3Q8N4P3 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
HDDC3Q8N4P3 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC18.72■□□□□ 0.59
HDDC3Q8N4P3 FAAHP1-202ENST00000446499 1238 ntBASIC18.72■□□□□ 0.59
HDDC3Q8N4P3 BX276092.5-203ENST00000456199 560 ntBASIC18.72■□□□□ 0.59
HDDC3Q8N4P3 CNP-204ENST00000472031 1019 ntTSL 2 BASIC18.72■□□□□ 0.59
HDDC3Q8N4P3 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC18.72■□□□□ 0.59
HDDC3Q8N4P3 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC18.72■□□□□ 0.59
HDDC3Q8N4P3 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
HDDC3Q8N4P3 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC18.72■□□□□ 0.59
HDDC3Q8N4P3 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC18.72■□□□□ 0.59
HDDC3Q8N4P3 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC18.72■□□□□ 0.59
HDDC3Q8N4P3 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
HDDC3Q8N4P3 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
HDDC3Q8N4P3 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
HDDC3Q8N4P3 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
HDDC3Q8N4P3 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
HDDC3Q8N4P3 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC18.72■□□□□ 0.59
HDDC3Q8N4P3 RNF165-205ENST00000588679 2904 ntBASIC18.72■□□□□ 0.59
HDDC3Q8N4P3 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
HDDC3Q8N4P3 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
HDDC3Q8N4P3 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
HDDC3Q8N4P3 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
HDDC3Q8N4P3 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
HDDC3Q8N4P3 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC18.72■□□□□ 0.59
HDDC3Q8N4P3 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC18.72■□□□□ 0.59
HDDC3Q8N4P3 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC18.72■□□□□ 0.59
HDDC3Q8N4P3 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
HDDC3Q8N4P3 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC18.72■□□□□ 0.59
HDDC3Q8N4P3 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
HDDC3Q8N4P3 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
HDDC3Q8N4P3 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
HDDC3Q8N4P3 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
HDDC3Q8N4P3 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC18.71■□□□□ 0.59
HDDC3Q8N4P3 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC18.71■□□□□ 0.59
HDDC3Q8N4P3 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
HDDC3Q8N4P3 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
HDDC3Q8N4P3 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC18.71■□□□□ 0.59
HDDC3Q8N4P3 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
HDDC3Q8N4P3 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
HDDC3Q8N4P3 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
HDDC3Q8N4P3 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
HDDC3Q8N4P3 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
HDDC3Q8N4P3 FDX1P1-201ENST00000449115 551 ntBASIC18.71■□□□□ 0.59
HDDC3Q8N4P3 TSSC2-201ENST00000450217 709 ntBASIC18.71■□□□□ 0.59
HDDC3Q8N4P3 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC18.71■□□□□ 0.59
HDDC3Q8N4P3 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC18.71■□□□□ 0.59
HDDC3Q8N4P3 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC18.71■□□□□ 0.59
HDDC3Q8N4P3 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC18.71■□□□□ 0.59
HDDC3Q8N4P3 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
HDDC3Q8N4P3 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC18.71■□□□□ 0.59
HDDC3Q8N4P3 AL121672.3-201ENST00000608644 468 ntBASIC18.71■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 18.9 ms