Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
CCDC144BQ3MJ40 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CCDC144BQ3MJ40 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
CCDC144BQ3MJ40 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC21.67■■□□□ 1.06
CCDC144BQ3MJ40 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
CCDC144BQ3MJ40 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CCDC144BQ3MJ40 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC21.67■■□□□ 1.06
CCDC144BQ3MJ40 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC21.67■■□□□ 1.06
CCDC144BQ3MJ40 AC120498.9-201ENST00000339021 3867 ntBASIC21.67■■□□□ 1.06
CCDC144BQ3MJ40 Telomerase-vert.1-201ENST00000363312 438 ntBASIC21.67■■□□□ 1.06
CCDC144BQ3MJ40 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
CCDC144BQ3MJ40 KRT18P38-201ENST00000449496 1282 ntBASIC21.67■■□□□ 1.06
CCDC144BQ3MJ40 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC21.67■■□□□ 1.06
CCDC144BQ3MJ40 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
CCDC144BQ3MJ40 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC21.67■■□□□ 1.06
CCDC144BQ3MJ40 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
CCDC144BQ3MJ40 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CCDC144BQ3MJ40 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
CCDC144BQ3MJ40 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CCDC144BQ3MJ40 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CCDC144BQ3MJ40 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
CCDC144BQ3MJ40 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CCDC144BQ3MJ40 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CCDC144BQ3MJ40 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CCDC144BQ3MJ40 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC21.66■■□□□ 1.06
CCDC144BQ3MJ40 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CCDC144BQ3MJ40 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CCDC144BQ3MJ40 AL161938.1-201ENST00000569833 2180 ntBASIC21.66■■□□□ 1.06
CCDC144BQ3MJ40 AR-207ENST00000612010 3896 ntTSL 5 BASIC21.66■■□□□ 1.06
CCDC144BQ3MJ40 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CCDC144BQ3MJ40 BET1L-202ENST00000332865 533 ntTSL 5 BASIC21.66■■□□□ 1.06
CCDC144BQ3MJ40 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CCDC144BQ3MJ40 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC21.66■■□□□ 1.06
CCDC144BQ3MJ40 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CCDC144BQ3MJ40 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC21.66■■□□□ 1.06
CCDC144BQ3MJ40 TOLLIP-AS1-201ENST00000530897 939 ntBASIC21.66■■□□□ 1.06
CCDC144BQ3MJ40 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC21.66■■□□□ 1.06
CCDC144BQ3MJ40 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CCDC144BQ3MJ40 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CCDC144BQ3MJ40 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC21.66■■□□□ 1.06
CCDC144BQ3MJ40 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
CCDC144BQ3MJ40 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
CCDC144BQ3MJ40 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
CCDC144BQ3MJ40 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC21.66■■□□□ 1.06
CCDC144BQ3MJ40 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CCDC144BQ3MJ40 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC21.65■■□□□ 1.06
CCDC144BQ3MJ40 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CCDC144BQ3MJ40 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CCDC144BQ3MJ40 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC21.65■■□□□ 1.06
CCDC144BQ3MJ40 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC21.65■■□□□ 1.06
CCDC144BQ3MJ40 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CCDC144BQ3MJ40 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CCDC144BQ3MJ40 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CCDC144BQ3MJ40 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CCDC144BQ3MJ40 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC21.65■■□□□ 1.06
CCDC144BQ3MJ40 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC21.65■■□□□ 1.06
CCDC144BQ3MJ40 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC21.65■■□□□ 1.06
CCDC144BQ3MJ40 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC21.65■■□□□ 1.06
CCDC144BQ3MJ40 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CCDC144BQ3MJ40 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC21.65■■□□□ 1.06
CCDC144BQ3MJ40 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
CCDC144BQ3MJ40 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC21.65■■□□□ 1.06
CCDC144BQ3MJ40 USP49-202ENST00000373010 2446 ntTSL 5 BASIC21.65■■□□□ 1.06
CCDC144BQ3MJ40 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
CCDC144BQ3MJ40 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC21.64■■□□□ 1.06
CCDC144BQ3MJ40 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC21.64■■□□□ 1.06
CCDC144BQ3MJ40 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
CCDC144BQ3MJ40 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC21.64■■□□□ 1.06
CCDC144BQ3MJ40 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC21.64■■□□□ 1.06
CCDC144BQ3MJ40 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.06
CCDC144BQ3MJ40 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.06
CCDC144BQ3MJ40 AC005332.1-201ENST00000577698 1310 ntBASIC21.64■■□□□ 1.05
CCDC144BQ3MJ40 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
CCDC144BQ3MJ40 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC21.64■■□□□ 1.05
CCDC144BQ3MJ40 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
CCDC144BQ3MJ40 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC21.64■■□□□ 1.05
CCDC144BQ3MJ40 PHB2-202ENST00000440277 996 ntTSL 5 BASIC21.64■■□□□ 1.05
CCDC144BQ3MJ40 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC21.64■■□□□ 1.05
CCDC144BQ3MJ40 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC21.64■■□□□ 1.05
CCDC144BQ3MJ40 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC21.64■■□□□ 1.05
CCDC144BQ3MJ40 ANKRD18DP-204ENST00000455355 1975 ntBASIC21.64■■□□□ 1.05
CCDC144BQ3MJ40 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
CCDC144BQ3MJ40 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC21.64■■□□□ 1.05
CCDC144BQ3MJ40 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC21.64■■□□□ 1.05
CCDC144BQ3MJ40 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
CCDC144BQ3MJ40 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.05
CCDC144BQ3MJ40 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
CCDC144BQ3MJ40 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
CCDC144BQ3MJ40 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC21.64■■□□□ 1.05
CCDC144BQ3MJ40 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
CCDC144BQ3MJ40 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
CCDC144BQ3MJ40 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.05
CCDC144BQ3MJ40 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
CCDC144BQ3MJ40 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CCDC144BQ3MJ40 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CCDC144BQ3MJ40 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
CCDC144BQ3MJ40 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC21.63■■□□□ 1.05
CCDC144BQ3MJ40 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
CCDC144BQ3MJ40 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
CCDC144BQ3MJ40 AC018470.1-201ENST00000624790 3129 ntBASIC21.63■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 51.2 ms