Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
H3F3AP84243 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
H3F3AP84243 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC16.69■□□□□ 0.26
H3F3AP84243 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC16.69■□□□□ 0.26
H3F3AP84243 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC16.69■□□□□ 0.26
H3F3AP84243 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC16.69■□□□□ 0.26
H3F3AP84243 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC16.69■□□□□ 0.26
H3F3AP84243 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
H3F3AP84243 AL138966.2-201ENST00000621997 464 ntBASIC16.69■□□□□ 0.26
H3F3AP84243 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC16.69■□□□□ 0.26
H3F3AP84243 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
H3F3AP84243 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
H3F3AP84243 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC16.69■□□□□ 0.26
H3F3AP84243 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
H3F3AP84243 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
H3F3AP84243 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
H3F3AP84243 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
H3F3AP84243 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
H3F3AP84243 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC16.69■□□□□ 0.26
H3F3AP84243 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
H3F3AP84243 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC16.69■□□□□ 0.26
H3F3AP84243 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC16.69■□□□□ 0.26
H3F3AP84243 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC16.69■□□□□ 0.26
H3F3AP84243 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC16.69■□□□□ 0.26
H3F3AP84243 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
H3F3AP84243 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
H3F3AP84243 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
H3F3AP84243 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
H3F3AP84243 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC16.68■□□□□ 0.26
H3F3AP84243 AC004408.2-201ENST00000623613 2777 ntBASIC16.68■□□□□ 0.26
H3F3AP84243 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
H3F3AP84243 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
H3F3AP84243 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
H3F3AP84243 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
H3F3AP84243 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC16.68■□□□□ 0.26
H3F3AP84243 ARL16-209ENST00000573715 763 ntTSL 3 BASIC16.68■□□□□ 0.26
H3F3AP84243 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC16.68■□□□□ 0.26
H3F3AP84243 ARL16-211ENST00000576135 694 ntTSL 3 BASIC16.68■□□□□ 0.26
H3F3AP84243 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC16.68■□□□□ 0.26
H3F3AP84243 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC16.68■□□□□ 0.26
H3F3AP84243 AC005363.2-201ENST00000618631 242 ntBASIC16.68■□□□□ 0.26
H3F3AP84243 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC16.68■□□□□ 0.26
H3F3AP84243 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
H3F3AP84243 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC16.68■□□□□ 0.26
H3F3AP84243 KRT8P7-201ENST00000533003 1432 ntBASIC16.68■□□□□ 0.26
H3F3AP84243 HOXB1-202ENST00000577092 1414 ntBASIC16.68■□□□□ 0.26
H3F3AP84243 AC073508.3-201ENST00000619697 1419 ntBASIC16.68■□□□□ 0.26
H3F3AP84243 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC16.68■□□□□ 0.26
H3F3AP84243 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
H3F3AP84243 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
H3F3AP84243 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC16.67■□□□□ 0.26
H3F3AP84243 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
H3F3AP84243 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
H3F3AP84243 AC034236.2-201ENST00000606662 1610 ntBASIC16.67■□□□□ 0.26
H3F3AP84243 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
H3F3AP84243 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
H3F3AP84243 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC16.67■□□□□ 0.26
H3F3AP84243 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
H3F3AP84243 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
H3F3AP84243 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
H3F3AP84243 AC113347.1-201ENST00000413321 391 ntBASIC16.67■□□□□ 0.26
H3F3AP84243 ECEL1P3-201ENST00000427961 737 ntBASIC16.67■□□□□ 0.26
H3F3AP84243 ELP6-205ENST00000439305 880 ntTSL 2 BASIC16.67■□□□□ 0.26
H3F3AP84243 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC16.67■□□□□ 0.26
H3F3AP84243 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC16.67■□□□□ 0.26
H3F3AP84243 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC16.67■□□□□ 0.26
H3F3AP84243 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
H3F3AP84243 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC16.67■□□□□ 0.26
H3F3AP84243 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
H3F3AP84243 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
H3F3AP84243 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
H3F3AP84243 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC16.67■□□□□ 0.26
H3F3AP84243 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
H3F3AP84243 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
H3F3AP84243 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
H3F3AP84243 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
H3F3AP84243 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
H3F3AP84243 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
H3F3AP84243 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
H3F3AP84243 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC16.67■□□□□ 0.26
H3F3AP84243 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
H3F3AP84243 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
H3F3AP84243 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC16.67■□□□□ 0.26
H3F3AP84243 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
H3F3AP84243 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
H3F3AP84243 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC16.66■□□□□ 0.26
H3F3AP84243 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
H3F3AP84243 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
H3F3AP84243 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC16.66■□□□□ 0.26
H3F3AP84243 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
H3F3AP84243 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
H3F3AP84243 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
H3F3AP84243 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
H3F3AP84243 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
H3F3AP84243 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
H3F3AP84243 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
H3F3AP84243 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
H3F3AP84243 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
H3F3AP84243 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
H3F3AP84243 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC16.66■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 36.1 ms