Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC18.34■□□□□ 0.53
PKNOX1P55347 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
PKNOX1P55347 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
PKNOX1P55347 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
PKNOX1P55347 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
PKNOX1P55347 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
PKNOX1P55347 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC18.34■□□□□ 0.53
PKNOX1P55347 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC18.34■□□□□ 0.53
PKNOX1P55347 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC18.34■□□□□ 0.53
PKNOX1P55347 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC18.34■□□□□ 0.53
PKNOX1P55347 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC18.34■□□□□ 0.53
PKNOX1P55347 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC18.34■□□□□ 0.53
PKNOX1P55347 AC124016.1-201ENST00000609552 612 ntBASIC18.34■□□□□ 0.53
PKNOX1P55347 AC131212.4-201ENST00000623606 975 ntBASIC18.34■□□□□ 0.53
PKNOX1P55347 MADD-208ENST00000405573 1823 ntTSL 5 BASIC18.34■□□□□ 0.53
PKNOX1P55347 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC18.34■□□□□ 0.53
PKNOX1P55347 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
PKNOX1P55347 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
PKNOX1P55347 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
PKNOX1P55347 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC18.34■□□□□ 0.53
PKNOX1P55347 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
PKNOX1P55347 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC18.34■□□□□ 0.53
PKNOX1P55347 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
PKNOX1P55347 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
PKNOX1P55347 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
PKNOX1P55347 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC18.34■□□□□ 0.53
PKNOX1P55347 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
PKNOX1P55347 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
PKNOX1P55347 RCC2P6-201ENST00000526625 1557 ntBASIC18.34■□□□□ 0.53
PKNOX1P55347 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
PKNOX1P55347 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC18.34■□□□□ 0.53
PKNOX1P55347 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
PKNOX1P55347 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
PKNOX1P55347 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.53
PKNOX1P55347 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.53
PKNOX1P55347 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC18.33■□□□□ 0.53
PKNOX1P55347 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC18.33■□□□□ 0.53
PKNOX1P55347 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
PKNOX1P55347 HTR7P1-202ENST00000624664 4411 ntBASIC18.33■□□□□ 0.53
PKNOX1P55347 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
PKNOX1P55347 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
PKNOX1P55347 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
PKNOX1P55347 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC18.33■□□□□ 0.52
PKNOX1P55347 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
PKNOX1P55347 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC18.33■□□□□ 0.52
PKNOX1P55347 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC18.33■□□□□ 0.52
PKNOX1P55347 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
PKNOX1P55347 KRT18P6-201ENST00000555540 1265 ntBASIC18.33■□□□□ 0.52
PKNOX1P55347 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC18.33■□□□□ 0.52
PKNOX1P55347 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC18.33■□□□□ 0.52
PKNOX1P55347 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC18.33■□□□□ 0.52
PKNOX1P55347 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
PKNOX1P55347 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC18.33■□□□□ 0.52
PKNOX1P55347 AC110285.5-201ENST00000611501 352 ntBASIC18.33■□□□□ 0.52
PKNOX1P55347 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
PKNOX1P55347 HEIH-201ENST00000623091 1652 ntBASIC18.33■□□□□ 0.52
PKNOX1P55347 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
PKNOX1P55347 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
PKNOX1P55347 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
PKNOX1P55347 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
PKNOX1P55347 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
PKNOX1P55347 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
PKNOX1P55347 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC18.33■□□□□ 0.52
PKNOX1P55347 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
PKNOX1P55347 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
PKNOX1P55347 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
PKNOX1P55347 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
PKNOX1P55347 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
PKNOX1P55347 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC18.32■□□□□ 0.52
PKNOX1P55347 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
PKNOX1P55347 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
PKNOX1P55347 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
PKNOX1P55347 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
PKNOX1P55347 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
PKNOX1P55347 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC18.32■□□□□ 0.52
PKNOX1P55347 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
PKNOX1P55347 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
PKNOX1P55347 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
PKNOX1P55347 ESRRAP1-201ENST00000400596 1257 ntBASIC18.32■□□□□ 0.52
PKNOX1P55347 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
PKNOX1P55347 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
PKNOX1P55347 PRSS44-201ENST00000515154 1146 ntBASIC18.32■□□□□ 0.52
PKNOX1P55347 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
PKNOX1P55347 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC18.32■□□□□ 0.52
PKNOX1P55347 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC18.32■□□□□ 0.52
PKNOX1P55347 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
PKNOX1P55347 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC18.32■□□□□ 0.52
PKNOX1P55347 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
PKNOX1P55347 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
PKNOX1P55347 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
PKNOX1P55347 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC18.32■□□□□ 0.52
PKNOX1P55347 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC18.32■□□□□ 0.52
PKNOX1P55347 KRT8P11-201ENST00000409686 1436 ntBASIC18.32■□□□□ 0.52
PKNOX1P55347 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC18.31■□□□□ 0.52
PKNOX1P55347 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PKNOX1P55347 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PKNOX1P55347 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PKNOX1P55347 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC18.31■□□□□ 0.52
PKNOX1P55347 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC18.31■□□□□ 0.52
PKNOX1P55347 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC18.31■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms