Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
LIM2P55344 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
LIM2P55344 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
LIM2P55344 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC17.73■□□□□ 0.43
LIM2P55344 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
LIM2P55344 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
LIM2P55344 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC17.73■□□□□ 0.43
LIM2P55344 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
LIM2P55344 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
LIM2P55344 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
LIM2P55344 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
LIM2P55344 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
LIM2P55344 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
LIM2P55344 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC17.73■□□□□ 0.43
LIM2P55344 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
LIM2P55344 TMA16-209ENST00000513272 803 ntTSL 2 BASIC17.73■□□□□ 0.43
LIM2P55344 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC17.73■□□□□ 0.43
LIM2P55344 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC17.73■□□□□ 0.43
LIM2P55344 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
LIM2P55344 AC012306.2-201ENST00000609350 630 ntBASIC17.73■□□□□ 0.43
LIM2P55344 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC17.73■□□□□ 0.43
LIM2P55344 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
LIM2P55344 AC093525.10-201ENST00000625130 1569 ntBASIC17.73■□□□□ 0.43
LIM2P55344 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
LIM2P55344 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
LIM2P55344 NFYC-AS1-201ENST00000606277 1687 ntBASIC17.73■□□□□ 0.43
LIM2P55344 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
LIM2P55344 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
LIM2P55344 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC17.73■□□□□ 0.43
LIM2P55344 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
LIM2P55344 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
LIM2P55344 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC17.72■□□□□ 0.43
LIM2P55344 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
LIM2P55344 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
LIM2P55344 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC17.72■□□□□ 0.43
LIM2P55344 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
LIM2P55344 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC17.72■□□□□ 0.43
LIM2P55344 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
LIM2P55344 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
LIM2P55344 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC17.72■□□□□ 0.43
LIM2P55344 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
LIM2P55344 ENSA-205ENST00000361532 792 ntTSL 2 BASIC17.72■□□□□ 0.43
LIM2P55344 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
LIM2P55344 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC17.72■□□□□ 0.43
LIM2P55344 AC211429.1-201ENST00000415277 523 ntBASIC17.72■□□□□ 0.43
LIM2P55344 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC17.72■□□□□ 0.43
LIM2P55344 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
LIM2P55344 CLN6-221ENST00000637494 765 ntTSL 5 BASIC17.72■□□□□ 0.43
LIM2P55344 AC097493.4-201ENST00000641197 219 ntBASIC17.72■□□□□ 0.43
LIM2P55344 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
LIM2P55344 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
LIM2P55344 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
LIM2P55344 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
LIM2P55344 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
LIM2P55344 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC17.72■□□□□ 0.43
LIM2P55344 WIZP1-201ENST00000531444 2299 ntBASIC17.72■□□□□ 0.43
LIM2P55344 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
LIM2P55344 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LIM2P55344 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
LIM2P55344 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC17.71■□□□□ 0.43
LIM2P55344 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LIM2P55344 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
LIM2P55344 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LIM2P55344 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
LIM2P55344 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC17.71■□□□□ 0.43
LIM2P55344 COBL-210ENST00000632460 1941 ntTSL 5 BASIC17.71■□□□□ 0.43
LIM2P55344 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
LIM2P55344 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
LIM2P55344 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
LIM2P55344 DUT-205ENST00000558813 769 ntTSL 2 BASIC17.71■□□□□ 0.43
LIM2P55344 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC17.71■□□□□ 0.43
LIM2P55344 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC17.71■□□□□ 0.43
LIM2P55344 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LIM2P55344 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LIM2P55344 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LIM2P55344 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LIM2P55344 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LIM2P55344 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC17.71■□□□□ 0.43
LIM2P55344 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC17.71■□□□□ 0.43
LIM2P55344 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
LIM2P55344 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
LIM2P55344 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
LIM2P55344 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC17.7■□□□□ 0.42
LIM2P55344 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
LIM2P55344 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC17.7■□□□□ 0.42
LIM2P55344 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LIM2P55344 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LIM2P55344 SNAI3-AS1-205ENST00000568633 2096 ntBASIC17.7■□□□□ 0.42
LIM2P55344 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LIM2P55344 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LIM2P55344 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC17.7■□□□□ 0.42
LIM2P55344 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
LIM2P55344 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC17.7■□□□□ 0.42
LIM2P55344 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LIM2P55344 HMGA1P5-201ENST00000412453 271 ntBASIC17.7■□□□□ 0.42
LIM2P55344 PHB2-202ENST00000440277 996 ntTSL 5 BASIC17.7■□□□□ 0.42
LIM2P55344 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC17.7■□□□□ 0.42
LIM2P55344 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
LIM2P55344 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC17.7■□□□□ 0.42
LIM2P55344 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms