Protein–RNA interactions for Protein: P55287

CDH11, Cadherin-11, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH11P55287 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CDH11P55287 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CDH11P55287 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CDH11P55287 TREX2-204ENST00000370212 861 ntTSL 5 BASIC17.13■□□□□ 0.33
CDH11P55287 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
CDH11P55287 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
CDH11P55287 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CDH11P55287 KRT16P5-201ENST00000455284 522 ntBASIC17.13■□□□□ 0.33
CDH11P55287 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC17.13■□□□□ 0.33
CDH11P55287 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CDH11P55287 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC17.13■□□□□ 0.33
CDH11P55287 AC004264.1-201ENST00000608354 794 ntBASIC17.13■□□□□ 0.33
CDH11P55287 AC113410.3-201ENST00000623366 203 ntBASIC17.13■□□□□ 0.33
CDH11P55287 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
CDH11P55287 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC17.13■□□□□ 0.33
CDH11P55287 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CDH11P55287 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC17.13■□□□□ 0.33
CDH11P55287 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CDH11P55287 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CDH11P55287 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC17.13■□□□□ 0.33
CDH11P55287 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC17.13■□□□□ 0.33
CDH11P55287 NOC2LP2-201ENST00000407594 1944 ntBASIC17.13■□□□□ 0.33
CDH11P55287 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CDH11P55287 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CDH11P55287 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CDH11P55287 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC17.13■□□□□ 0.33
CDH11P55287 PCDHB18P-201ENST00000524813 2368 ntBASIC17.13■□□□□ 0.33
CDH11P55287 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
CDH11P55287 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
CDH11P55287 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CDH11P55287 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CDH11P55287 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CDH11P55287 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CDH11P55287 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC17.12■□□□□ 0.33
CDH11P55287 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CDH11P55287 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
CDH11P55287 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
CDH11P55287 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC17.12■□□□□ 0.33
CDH11P55287 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
CDH11P55287 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CDH11P55287 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
CDH11P55287 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC17.12■□□□□ 0.33
CDH11P55287 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC17.12■□□□□ 0.33
CDH11P55287 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC17.12■□□□□ 0.33
CDH11P55287 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CDH11P55287 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
CDH11P55287 AC073912.3-201ENST00000624414 853 ntBASIC17.12■□□□□ 0.33
CDH11P55287 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CDH11P55287 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
CDH11P55287 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC17.12■□□□□ 0.33
CDH11P55287 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CDH11P55287 HTR7P1-201ENST00000538670 1336 ntBASIC17.12■□□□□ 0.33
CDH11P55287 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CDH11P55287 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
CDH11P55287 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CDH11P55287 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC17.12■□□□□ 0.33
CDH11P55287 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CDH11P55287 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
CDH11P55287 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CDH11P55287 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC17.12■□□□□ 0.33
CDH11P55287 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CDH11P55287 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CDH11P55287 MADD-208ENST00000405573 1823 ntTSL 5 BASIC17.12■□□□□ 0.33
CDH11P55287 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CDH11P55287 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CDH11P55287 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CDH11P55287 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CDH11P55287 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
CDH11P55287 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
CDH11P55287 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CDH11P55287 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CDH11P55287 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
CDH11P55287 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CDH11P55287 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC17.11■□□□□ 0.33
CDH11P55287 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CDH11P55287 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CDH11P55287 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CDH11P55287 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC17.11■□□□□ 0.33
CDH11P55287 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CDH11P55287 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CDH11P55287 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
CDH11P55287 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
CDH11P55287 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CDH11P55287 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC17.11■□□□□ 0.33
CDH11P55287 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CDH11P55287 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC17.11■□□□□ 0.33
CDH11P55287 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CDH11P55287 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CDH11P55287 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC17.11■□□□□ 0.33
CDH11P55287 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC17.11■□□□□ 0.33
CDH11P55287 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC17.11■□□□□ 0.33
CDH11P55287 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC17.11■□□□□ 0.33
CDH11P55287 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC17.11■□□□□ 0.33
CDH11P55287 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC17.11■□□□□ 0.33
CDH11P55287 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CDH11P55287 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CDH11P55287 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
CDH11P55287 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CDH11P55287 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CDH11P55287 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 53.7 ms