Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
LIG3P49916 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
LIG3P49916 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
LIG3P49916 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC19.6■□□□□ 0.73
LIG3P49916 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
LIG3P49916 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC19.6■□□□□ 0.73
LIG3P49916 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
LIG3P49916 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
LIG3P49916 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC19.6■□□□□ 0.73
LIG3P49916 PENK-204ENST00000518770 863 ntTSL 2 BASIC19.6■□□□□ 0.73
LIG3P49916 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC19.6■□□□□ 0.73
LIG3P49916 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC19.6■□□□□ 0.73
LIG3P49916 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
LIG3P49916 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
LIG3P49916 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
LIG3P49916 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
LIG3P49916 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC19.6■□□□□ 0.73
LIG3P49916 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC19.6■□□□□ 0.73
LIG3P49916 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
LIG3P49916 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
LIG3P49916 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC19.6■□□□□ 0.73
LIG3P49916 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
LIG3P49916 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
LIG3P49916 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
LIG3P49916 EML3-212ENST00000494176 2901 ntTSL 2 BASIC19.59■□□□□ 0.73
LIG3P49916 EML3-216ENST00000529309 2909 ntTSL 2 BASIC19.59■□□□□ 0.73
LIG3P49916 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
LIG3P49916 WIZP1-201ENST00000531444 2299 ntBASIC19.59■□□□□ 0.73
LIG3P49916 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC19.59■□□□□ 0.73
LIG3P49916 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
LIG3P49916 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC19.59■□□□□ 0.73
LIG3P49916 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
LIG3P49916 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
LIG3P49916 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
LIG3P49916 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC19.59■□□□□ 0.73
LIG3P49916 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC19.59■□□□□ 0.73
LIG3P49916 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC19.59■□□□□ 0.73
LIG3P49916 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC19.59■□□□□ 0.73
LIG3P49916 AC073195.1-201ENST00000607241 877 ntBASIC19.59■□□□□ 0.73
LIG3P49916 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC19.59■□□□□ 0.73
LIG3P49916 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
LIG3P49916 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
LIG3P49916 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
LIG3P49916 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
LIG3P49916 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
LIG3P49916 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC19.59■□□□□ 0.73
LIG3P49916 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC19.59■□□□□ 0.73
LIG3P49916 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
LIG3P49916 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
LIG3P49916 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
LIG3P49916 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
LIG3P49916 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC19.59■□□□□ 0.73
LIG3P49916 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC19.59■□□□□ 0.73
LIG3P49916 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
LIG3P49916 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
LIG3P49916 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
LIG3P49916 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
LIG3P49916 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
LIG3P49916 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
LIG3P49916 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
LIG3P49916 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
LIG3P49916 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.73
LIG3P49916 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.73
LIG3P49916 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC19.58■□□□□ 0.73
LIG3P49916 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
LIG3P49916 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
LIG3P49916 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC19.58■□□□□ 0.72
LIG3P49916 FAM197Y1-201ENST00000421178 764 ntBASIC19.58■□□□□ 0.72
LIG3P49916 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC19.58■□□□□ 0.72
LIG3P49916 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
LIG3P49916 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.72
LIG3P49916 C1QL1P1-201ENST00000568105 661 ntBASIC19.58■□□□□ 0.72
LIG3P49916 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC19.58■□□□□ 0.72
LIG3P49916 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC19.58■□□□□ 0.72
LIG3P49916 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC19.58■□□□□ 0.72
LIG3P49916 CD177P1-201ENST00000606252 935 ntBASIC19.58■□□□□ 0.72
LIG3P49916 AL353708.3-201ENST00000610272 989 ntBASIC19.58■□□□□ 0.72
LIG3P49916 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
LIG3P49916 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.72
LIG3P49916 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
LIG3P49916 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC19.58■□□□□ 0.72
LIG3P49916 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC19.58■□□□□ 0.72
LIG3P49916 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
LIG3P49916 AC009237.14-201ENST00000609975 1594 ntBASIC19.57■□□□□ 0.72
LIG3P49916 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
LIG3P49916 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
LIG3P49916 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
LIG3P49916 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC19.57■□□□□ 0.72
LIG3P49916 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
LIG3P49916 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
LIG3P49916 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
LIG3P49916 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
LIG3P49916 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC19.57■□□□□ 0.72
LIG3P49916 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC19.57■□□□□ 0.72
LIG3P49916 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC19.57■□□□□ 0.72
LIG3P49916 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC19.57■□□□□ 0.72
LIG3P49916 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
LIG3P49916 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC19.57■□□□□ 0.72
LIG3P49916 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
LIG3P49916 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC19.57■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms