Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC16.47■□□□□ 0.23
SOX2P48431 PFKL-212ENST00000628044 129 ntTSL 3 BASIC16.47■□□□□ 0.23
SOX2P48431 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
SOX2P48431 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC16.47■□□□□ 0.23
SOX2P48431 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC16.47■□□□□ 0.23
SOX2P48431 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
SOX2P48431 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SOX2P48431 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC16.47■□□□□ 0.23
SOX2P48431 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC16.47■□□□□ 0.23
SOX2P48431 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC16.47■□□□□ 0.23
SOX2P48431 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
SOX2P48431 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SOX2P48431 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
SOX2P48431 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SOX2P48431 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC16.46■□□□□ 0.23
SOX2P48431 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SOX2P48431 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
SOX2P48431 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
SOX2P48431 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
SOX2P48431 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SOX2P48431 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SOX2P48431 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC16.46■□□□□ 0.23
SOX2P48431 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC16.46■□□□□ 0.23
SOX2P48431 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC16.46■□□□□ 0.23
SOX2P48431 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
SOX2P48431 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC16.46■□□□□ 0.23
SOX2P48431 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
SOX2P48431 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC16.46■□□□□ 0.23
SOX2P48431 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SOX2P48431 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC16.46■□□□□ 0.23
SOX2P48431 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC16.46■□□□□ 0.23
SOX2P48431 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC16.46■□□□□ 0.23
SOX2P48431 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SOX2P48431 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC16.46■□□□□ 0.23
SOX2P48431 PPP1R14BP3-201ENST00000509033 445 ntBASIC16.46■□□□□ 0.23
SOX2P48431 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
SOX2P48431 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC16.46■□□□□ 0.23
SOX2P48431 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC16.46■□□□□ 0.23
SOX2P48431 AC098934.4-201ENST00000564127 592 ntBASIC16.46■□□□□ 0.23
SOX2P48431 KLF2-202ENST00000592003 564 ntTSL 3 BASIC16.46■□□□□ 0.23
SOX2P48431 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
SOX2P48431 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SOX2P48431 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SOX2P48431 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC16.46■□□□□ 0.23
SOX2P48431 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC16.46■□□□□ 0.22
SOX2P48431 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC16.46■□□□□ 0.22
SOX2P48431 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
SOX2P48431 WAC-202ENST00000347934 2839 ntTSL 5 BASIC16.46■□□□□ 0.22
SOX2P48431 AL499627.1-201ENST00000569373 2188 ntBASIC16.45■□□□□ 0.22
SOX2P48431 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC16.45■□□□□ 0.22
SOX2P48431 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
SOX2P48431 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
SOX2P48431 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SOX2P48431 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
SOX2P48431 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC16.45■□□□□ 0.22
SOX2P48431 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC16.45■□□□□ 0.22
SOX2P48431 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
SOX2P48431 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC16.45■□□□□ 0.22
SOX2P48431 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC16.45■□□□□ 0.22
SOX2P48431 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC16.45■□□□□ 0.22
SOX2P48431 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC16.45■□□□□ 0.22
SOX2P48431 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SOX2P48431 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
SOX2P48431 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SOX2P48431 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC16.45■□□□□ 0.22
SOX2P48431 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC16.45■□□□□ 0.22
SOX2P48431 AC083880.1-201ENST00000608266 535 ntBASIC16.45■□□□□ 0.22
SOX2P48431 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC16.45■□□□□ 0.22
SOX2P48431 HLA-A-209ENST00000638375 975 ntBASIC16.45■□□□□ 0.22
SOX2P48431 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC16.45■□□□□ 0.22
SOX2P48431 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
SOX2P48431 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
SOX2P48431 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SOX2P48431 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC16.45■□□□□ 0.22
SOX2P48431 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC16.45■□□□□ 0.22
SOX2P48431 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC16.45■□□□□ 0.22
SOX2P48431 AP000997.3-201ENST00000623333 2250 ntBASIC16.45■□□□□ 0.22
SOX2P48431 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC16.45■□□□□ 0.22
SOX2P48431 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC16.45■□□□□ 0.22
SOX2P48431 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
SOX2P48431 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SOX2P48431 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC16.45■□□□□ 0.22
SOX2P48431 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC16.45■□□□□ 0.22
SOX2P48431 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SOX2P48431 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SOX2P48431 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC16.45■□□□□ 0.22
SOX2P48431 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
SOX2P48431 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SOX2P48431 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SOX2P48431 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SOX2P48431 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SOX2P48431 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC16.44■□□□□ 0.22
SOX2P48431 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC16.44■□□□□ 0.22
SOX2P48431 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SOX2P48431 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SOX2P48431 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SOX2P48431 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
SOX2P48431 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
SOX2P48431 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SOX2P48431 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC16.44■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms