Protein–RNA interactions for Protein: P41273

TNFSF9, Tumor necrosis factor ligand superfamily member 9, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFSF9P41273 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
TNFSF9P41273 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC20.21■□□□□ 0.83
TNFSF9P41273 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC20.21■□□□□ 0.83
TNFSF9P41273 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
TNFSF9P41273 MYC-208ENST00000641036 567 ntBASIC20.21■□□□□ 0.83
TNFSF9P41273 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TNFSF9P41273 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TNFSF9P41273 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
TNFSF9P41273 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC20.21■□□□□ 0.83
TNFSF9P41273 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TNFSF9P41273 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC20.21■□□□□ 0.83
TNFSF9P41273 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC20.21■□□□□ 0.83
TNFSF9P41273 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TNFSF9P41273 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
TNFSF9P41273 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
TNFSF9P41273 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC20.21■□□□□ 0.83
TNFSF9P41273 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TNFSF9P41273 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC20.21■□□□□ 0.83
TNFSF9P41273 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
TNFSF9P41273 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TNFSF9P41273 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC20.2■□□□□ 0.82
TNFSF9P41273 AC120498.9-201ENST00000339021 3867 ntBASIC20.2■□□□□ 0.82
TNFSF9P41273 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC20.2■□□□□ 0.82
TNFSF9P41273 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
TNFSF9P41273 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC20.2■□□□□ 0.82
TNFSF9P41273 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
TNFSF9P41273 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TNFSF9P41273 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TNFSF9P41273 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
TNFSF9P41273 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC20.2■□□□□ 0.82
TNFSF9P41273 GRAMD4P1-201ENST00000435181 1110 ntBASIC20.2■□□□□ 0.82
TNFSF9P41273 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC20.2■□□□□ 0.82
TNFSF9P41273 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC20.2■□□□□ 0.82
TNFSF9P41273 HOMER2P1-201ENST00000455653 964 ntBASIC20.2■□□□□ 0.82
TNFSF9P41273 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC20.2■□□□□ 0.82
TNFSF9P41273 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC20.2■□□□□ 0.82
TNFSF9P41273 NAT14-202ENST00000587400 416 ntTSL 5 BASIC20.2■□□□□ 0.82
TNFSF9P41273 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC20.2■□□□□ 0.82
TNFSF9P41273 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC20.2■□□□□ 0.82
TNFSF9P41273 DFFB-212ENST00000625756 649 ntTSL 5 BASIC20.2■□□□□ 0.82
TNFSF9P41273 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC20.2■□□□□ 0.82
TNFSF9P41273 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC20.2■□□□□ 0.82
TNFSF9P41273 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC20.2■□□□□ 0.82
TNFSF9P41273 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
TNFSF9P41273 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
TNFSF9P41273 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC20.2■□□□□ 0.82
TNFSF9P41273 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC20.2■□□□□ 0.82
TNFSF9P41273 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TNFSF9P41273 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
TNFSF9P41273 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
TNFSF9P41273 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
TNFSF9P41273 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC20.19■□□□□ 0.82
TNFSF9P41273 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TNFSF9P41273 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC20.19■□□□□ 0.82
TNFSF9P41273 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TNFSF9P41273 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
TNFSF9P41273 AC099343.3-201ENST00000605834 2503 ntBASIC20.19■□□□□ 0.82
TNFSF9P41273 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TNFSF9P41273 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
TNFSF9P41273 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
TNFSF9P41273 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
TNFSF9P41273 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
TNFSF9P41273 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC20.19■□□□□ 0.82
TNFSF9P41273 ARMC10P1-201ENST00000313754 855 ntBASIC20.19■□□□□ 0.82
TNFSF9P41273 SAPCD2P2-201ENST00000431719 1174 ntBASIC20.19■□□□□ 0.82
TNFSF9P41273 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC20.19■□□□□ 0.82
TNFSF9P41273 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
TNFSF9P41273 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC20.19■□□□□ 0.82
TNFSF9P41273 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
TNFSF9P41273 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
TNFSF9P41273 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC20.19■□□□□ 0.82
TNFSF9P41273 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
TNFSF9P41273 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TNFSF9P41273 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
TNFSF9P41273 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TNFSF9P41273 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
TNFSF9P41273 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TNFSF9P41273 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TNFSF9P41273 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
TNFSF9P41273 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
TNFSF9P41273 STARP1-201ENST00000397973 869 ntBASIC20.18■□□□□ 0.82
TNFSF9P41273 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TNFSF9P41273 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TNFSF9P41273 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
TNFSF9P41273 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TNFSF9P41273 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TNFSF9P41273 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TNFSF9P41273 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TNFSF9P41273 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TNFSF9P41273 RASA4DP-201ENST00000460726 1199 ntBASIC20.18■□□□□ 0.82
TNFSF9P41273 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
TNFSF9P41273 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC20.18■□□□□ 0.82
TNFSF9P41273 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC20.18■□□□□ 0.82
TNFSF9P41273 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC20.18■□□□□ 0.82
TNFSF9P41273 AC104390.1-201ENST00000555663 520 ntBASIC20.18■□□□□ 0.82
TNFSF9P41273 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC20.18■□□□□ 0.82
TNFSF9P41273 AL157888.1-201ENST00000631930 593 ntBASIC20.18■□□□□ 0.82
TNFSF9P41273 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TNFSF9P41273 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
TNFSF9P41273 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 41.1 ms