Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC21.8■■□□□ 1.08
COL2A1P02458 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
COL2A1P02458 AL845331.1-201ENST00000424978 1190 ntBASIC21.8■■□□□ 1.08
COL2A1P02458 IGHV3-47-201ENST00000425060 335 ntBASIC21.8■■□□□ 1.08
COL2A1P02458 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC21.8■■□□□ 1.08
COL2A1P02458 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
COL2A1P02458 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC21.8■■□□□ 1.08
COL2A1P02458 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.08
COL2A1P02458 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
COL2A1P02458 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
COL2A1P02458 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
COL2A1P02458 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
COL2A1P02458 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
COL2A1P02458 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
COL2A1P02458 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
COL2A1P02458 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC21.79■■□□□ 1.08
COL2A1P02458 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
COL2A1P02458 DDT-203ENST00000403754 569 ntTSL 3 BASIC21.79■■□□□ 1.08
COL2A1P02458 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC21.79■■□□□ 1.08
COL2A1P02458 DDT-206ENST00000430101 573 ntTSL 2 BASIC21.79■■□□□ 1.08
COL2A1P02458 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC21.79■■□□□ 1.08
COL2A1P02458 KRT18P31-201ENST00000506277 1292 ntBASIC21.79■■□□□ 1.08
COL2A1P02458 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC21.79■■□□□ 1.08
COL2A1P02458 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC21.79■■□□□ 1.08
COL2A1P02458 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC21.79■■□□□ 1.08
COL2A1P02458 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC21.79■■□□□ 1.08
COL2A1P02458 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
COL2A1P02458 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC21.79■■□□□ 1.08
COL2A1P02458 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
COL2A1P02458 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC21.79■■□□□ 1.08
COL2A1P02458 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
COL2A1P02458 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC21.79■■□□□ 1.08
COL2A1P02458 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
COL2A1P02458 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
COL2A1P02458 KRT8P10-201ENST00000450021 1447 ntBASIC21.79■■□□□ 1.08
COL2A1P02458 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
COL2A1P02458 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC21.79■■□□□ 1.08
COL2A1P02458 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC21.78■■□□□ 1.08
COL2A1P02458 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
COL2A1P02458 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
COL2A1P02458 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
COL2A1P02458 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
COL2A1P02458 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC21.78■■□□□ 1.08
COL2A1P02458 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC21.78■■□□□ 1.08
COL2A1P02458 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC21.78■■□□□ 1.08
COL2A1P02458 GUSBP12-201ENST00000513727 720 ntBASIC21.78■■□□□ 1.08
COL2A1P02458 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC21.78■■□□□ 1.08
COL2A1P02458 AP005901.3-202ENST00000581653 237 ntBASIC21.78■■□□□ 1.08
COL2A1P02458 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC21.78■■□□□ 1.08
COL2A1P02458 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC21.78■■□□□ 1.08
COL2A1P02458 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
COL2A1P02458 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
COL2A1P02458 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC21.78■■□□□ 1.08
COL2A1P02458 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC21.78■■□□□ 1.08
COL2A1P02458 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
COL2A1P02458 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
COL2A1P02458 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
COL2A1P02458 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
COL2A1P02458 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC21.78■■□□□ 1.08
COL2A1P02458 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC21.78■■□□□ 1.08
COL2A1P02458 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC21.78■■□□□ 1.08
COL2A1P02458 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC21.78■■□□□ 1.08
COL2A1P02458 LINC00167-201ENST00000530583 1419 ntBASIC21.78■■□□□ 1.08
COL2A1P02458 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
COL2A1P02458 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC21.78■■□□□ 1.08
COL2A1P02458 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
COL2A1P02458 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC21.77■■□□□ 1.08
COL2A1P02458 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC21.77■■□□□ 1.08
COL2A1P02458 BET1L-206ENST00000486280 665 ntTSL 3 BASIC21.77■■□□□ 1.08
COL2A1P02458 FOSL1P1-201ENST00000511041 816 ntBASIC21.77■■□□□ 1.08
COL2A1P02458 AL031008.1-201ENST00000619963 541 ntBASIC21.77■■□□□ 1.08
COL2A1P02458 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
COL2A1P02458 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
COL2A1P02458 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC21.77■■□□□ 1.08
COL2A1P02458 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
COL2A1P02458 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
COL2A1P02458 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
COL2A1P02458 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC21.77■■□□□ 1.08
COL2A1P02458 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
COL2A1P02458 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC21.77■■□□□ 1.08
COL2A1P02458 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
COL2A1P02458 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC21.77■■□□□ 1.07
COL2A1P02458 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC21.77■■□□□ 1.07
COL2A1P02458 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC21.77■■□□□ 1.07
COL2A1P02458 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC21.77■■□□□ 1.07
COL2A1P02458 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC21.77■■□□□ 1.07
COL2A1P02458 VENTXP7-201ENST00000475503 772 ntBASIC21.77■■□□□ 1.07
COL2A1P02458 BMF-207ENST00000559701 630 ntTSL 3 BASIC21.77■■□□□ 1.07
COL2A1P02458 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC21.77■■□□□ 1.07
COL2A1P02458 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC21.77■■□□□ 1.07
COL2A1P02458 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
COL2A1P02458 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC21.76■■□□□ 1.07
COL2A1P02458 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC21.76■■□□□ 1.07
COL2A1P02458 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
COL2A1P02458 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
COL2A1P02458 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC21.76■■□□□ 1.07
COL2A1P02458 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
COL2A1P02458 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
COL2A1P02458 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
COL2A1P02458 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 19.4 ms