Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SEMA3DO95025 HCG11-201ENST00000411553 5696 ntBASIC17.9■□□□□ 0.46
SEMA3DO95025 AC090340.1-201ENST00000620778 4980 ntBASIC17.9■□□□□ 0.46
SEMA3DO95025 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
SEMA3DO95025 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC17.9■□□□□ 0.46
SEMA3DO95025 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
SEMA3DO95025 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
SEMA3DO95025 AL109659.2-201ENST00000606809 1674 ntBASIC17.9■□□□□ 0.46
SEMA3DO95025 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SEMA3DO95025 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC17.9■□□□□ 0.46
SEMA3DO95025 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC17.9■□□□□ 0.46
SEMA3DO95025 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
SEMA3DO95025 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SEMA3DO95025 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
SEMA3DO95025 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC17.9■□□□□ 0.46
SEMA3DO95025 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC17.9■□□□□ 0.46
SEMA3DO95025 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC17.9■□□□□ 0.46
SEMA3DO95025 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC17.9■□□□□ 0.46
SEMA3DO95025 WAC-202ENST00000347934 2839 ntTSL 5 BASIC17.9■□□□□ 0.46
SEMA3DO95025 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SEMA3DO95025 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC17.9■□□□□ 0.46
SEMA3DO95025 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
SEMA3DO95025 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC17.9■□□□□ 0.46
SEMA3DO95025 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC17.9■□□□□ 0.46
SEMA3DO95025 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
SEMA3DO95025 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC17.89■□□□□ 0.46
SEMA3DO95025 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC17.89■□□□□ 0.46
SEMA3DO95025 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.46
SEMA3DO95025 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC17.89■□□□□ 0.46
SEMA3DO95025 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
SEMA3DO95025 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC17.89■□□□□ 0.45
SEMA3DO95025 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
SEMA3DO95025 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
SEMA3DO95025 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
SEMA3DO95025 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC17.89■□□□□ 0.45
SEMA3DO95025 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SEMA3DO95025 UNC93B2-201ENST00000285383 730 ntBASIC17.89■□□□□ 0.45
SEMA3DO95025 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SEMA3DO95025 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SEMA3DO95025 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC17.89■□□□□ 0.45
SEMA3DO95025 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
SEMA3DO95025 CRYGFP-201ENST00000418459 633 ntBASIC17.89■□□□□ 0.45
SEMA3DO95025 TSPY7P-201ENST00000431358 1114 ntBASIC17.89■□□□□ 0.45
SEMA3DO95025 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC17.89■□□□□ 0.45
SEMA3DO95025 RBM17P1-201ENST00000453646 1190 ntBASIC17.89■□□□□ 0.45
SEMA3DO95025 FDX2-206ENST00000492239 773 ntTSL 2 BASIC17.89■□□□□ 0.45
SEMA3DO95025 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC17.89■□□□□ 0.45
SEMA3DO95025 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC17.89■□□□□ 0.45
SEMA3DO95025 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC17.89■□□□□ 0.45
SEMA3DO95025 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC17.89■□□□□ 0.45
SEMA3DO95025 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
SEMA3DO95025 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
SEMA3DO95025 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC17.89■□□□□ 0.45
SEMA3DO95025 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SEMA3DO95025 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SEMA3DO95025 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SEMA3DO95025 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
SEMA3DO95025 WIZP1-201ENST00000531444 2299 ntBASIC17.89■□□□□ 0.45
SEMA3DO95025 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SEMA3DO95025 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SEMA3DO95025 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
SEMA3DO95025 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC17.89■□□□□ 0.45
SEMA3DO95025 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SEMA3DO95025 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SEMA3DO95025 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
SEMA3DO95025 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SEMA3DO95025 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
SEMA3DO95025 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SEMA3DO95025 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC17.88■□□□□ 0.45
SEMA3DO95025 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC17.88■□□□□ 0.45
SEMA3DO95025 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SEMA3DO95025 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC17.88■□□□□ 0.45
SEMA3DO95025 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC17.88■□□□□ 0.45
SEMA3DO95025 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC17.88■□□□□ 0.45
SEMA3DO95025 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SEMA3DO95025 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC17.88■□□□□ 0.45
SEMA3DO95025 MYC-208ENST00000641036 567 ntBASIC17.88■□□□□ 0.45
SEMA3DO95025 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC17.88■□□□□ 0.45
SEMA3DO95025 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC17.88■□□□□ 0.45
SEMA3DO95025 KRT17P2-201ENST00000300992 1314 ntBASIC17.88■□□□□ 0.45
SEMA3DO95025 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SEMA3DO95025 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SEMA3DO95025 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SEMA3DO95025 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC17.87■□□□□ 0.45
SEMA3DO95025 AC005332.8-201ENST00000622750 2735 ntBASIC17.87■□□□□ 0.45
SEMA3DO95025 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC17.87■□□□□ 0.45
SEMA3DO95025 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC17.87■□□□□ 0.45
SEMA3DO95025 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SEMA3DO95025 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
SEMA3DO95025 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
SEMA3DO95025 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC17.87■□□□□ 0.45
SEMA3DO95025 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SEMA3DO95025 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SEMA3DO95025 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC17.87■□□□□ 0.45
SEMA3DO95025 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC17.87■□□□□ 0.45
SEMA3DO95025 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC17.87■□□□□ 0.45
SEMA3DO95025 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC17.87■□□□□ 0.45
SEMA3DO95025 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SEMA3DO95025 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC17.87■□□□□ 0.45
SEMA3DO95025 AC008622.2-201ENST00000617006 1229 ntBASIC17.87■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms