Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 OR7E14P-202ENST00000530490 1290 ntBASIC26.26■■□□□ 1.79
NPHP4O75161 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC26.26■■□□□ 1.79
NPHP4O75161 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
NPHP4O75161 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC26.26■■□□□ 1.79
NPHP4O75161 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
NPHP4O75161 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
NPHP4O75161 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC26.26■■□□□ 1.79
NPHP4O75161 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC26.26■■□□□ 1.79
NPHP4O75161 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
NPHP4O75161 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
NPHP4O75161 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC26.25■■□□□ 1.79
NPHP4O75161 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
NPHP4O75161 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC26.25■■□□□ 1.79
NPHP4O75161 AC008735.5-201ENST00000623544 497 ntBASIC26.25■■□□□ 1.79
NPHP4O75161 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC26.25■■□□□ 1.79
NPHP4O75161 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
NPHP4O75161 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
NPHP4O75161 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC26.25■■□□□ 1.79
NPHP4O75161 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
NPHP4O75161 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC26.25■■□□□ 1.79
NPHP4O75161 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC26.25■■□□□ 1.79
NPHP4O75161 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
NPHP4O75161 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
NPHP4O75161 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
NPHP4O75161 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
NPHP4O75161 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC26.24■■□□□ 1.79
NPHP4O75161 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC26.24■■□□□ 1.79
NPHP4O75161 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC26.24■■□□□ 1.79
NPHP4O75161 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC26.24■■□□□ 1.79
NPHP4O75161 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC26.24■■□□□ 1.79
NPHP4O75161 KRT8P32-201ENST00000512863 1461 ntBASIC26.24■■□□□ 1.79
NPHP4O75161 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
NPHP4O75161 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
NPHP4O75161 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
NPHP4O75161 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC26.24■■□□□ 1.79
NPHP4O75161 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
NPHP4O75161 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC26.24■■□□□ 1.79
NPHP4O75161 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
NPHP4O75161 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
NPHP4O75161 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC26.24■■□□□ 1.79
NPHP4O75161 INTS4P1-201ENST00000438455 1935 ntBASIC26.24■■□□□ 1.79
NPHP4O75161 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC26.24■■□□□ 1.79
NPHP4O75161 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC26.24■■□□□ 1.79
NPHP4O75161 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC26.23■■□□□ 1.79
NPHP4O75161 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC26.23■■□□□ 1.79
NPHP4O75161 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC26.23■■□□□ 1.79
NPHP4O75161 RAB17-203ENST00000409576 466 ntTSL 3 BASIC26.23■■□□□ 1.79
NPHP4O75161 AC007967.2-201ENST00000432613 625 ntBASIC26.23■■□□□ 1.79
NPHP4O75161 RBSN-204ENST00000449050 903 ntTSL 2 BASIC26.23■■□□□ 1.79
NPHP4O75161 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC26.23■■□□□ 1.79
NPHP4O75161 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC26.23■■□□□ 1.79
NPHP4O75161 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
NPHP4O75161 ANKRD20A8P-203ENST00000641373 517 ntBASIC26.23■■□□□ 1.79
NPHP4O75161 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
NPHP4O75161 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC26.23■■□□□ 1.79
NPHP4O75161 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC26.23■■□□□ 1.79
NPHP4O75161 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC26.23■■□□□ 1.79
NPHP4O75161 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC26.23■■□□□ 1.79
NPHP4O75161 AP005117.1-201ENST00000584346 1413 ntBASIC26.23■■□□□ 1.79
NPHP4O75161 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
NPHP4O75161 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
NPHP4O75161 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC26.23■■□□□ 1.79
NPHP4O75161 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC26.23■■□□□ 1.79
NPHP4O75161 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC26.22■■□□□ 1.79
NPHP4O75161 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
NPHP4O75161 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC26.22■■□□□ 1.79
NPHP4O75161 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC26.22■■□□□ 1.79
NPHP4O75161 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC26.22■■□□□ 1.79
NPHP4O75161 COX5A-204ENST00000567270 579 ntTSL 3 BASIC26.22■■□□□ 1.79
NPHP4O75161 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC26.22■■□□□ 1.79
NPHP4O75161 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
NPHP4O75161 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC26.22■■□□□ 1.79
NPHP4O75161 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC26.22■■□□□ 1.79
NPHP4O75161 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC26.22■■□□□ 1.79
NPHP4O75161 AC211486.1-202ENST00000416371 468 ntBASIC26.22■■□□□ 1.79
NPHP4O75161 MEG3-211ENST00000452514 461 ntTSL 3 BASIC26.22■■□□□ 1.79
NPHP4O75161 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC26.22■■□□□ 1.79
NPHP4O75161 AC211476.1-201ENST00000503899 468 ntBASIC26.22■■□□□ 1.79
NPHP4O75161 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC26.22■■□□□ 1.79
NPHP4O75161 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC26.22■■□□□ 1.79
NPHP4O75161 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC26.21■■□□□ 1.79
NPHP4O75161 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
NPHP4O75161 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC26.21■■□□□ 1.79
NPHP4O75161 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC26.21■■□□□ 1.79
NPHP4O75161 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
NPHP4O75161 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC26.21■■□□□ 1.79
NPHP4O75161 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC26.21■■□□□ 1.79
NPHP4O75161 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
NPHP4O75161 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC26.21■■□□□ 1.79
NPHP4O75161 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC26.21■■□□□ 1.79
NPHP4O75161 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC26.21■■□□□ 1.79
NPHP4O75161 UNC93B6-202ENST00000528242 690 ntBASIC26.21■■□□□ 1.79
NPHP4O75161 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC26.21■■□□□ 1.79
NPHP4O75161 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC26.21■■□□□ 1.79
NPHP4O75161 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC26.21■■□□□ 1.79
NPHP4O75161 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC26.21■■□□□ 1.79
NPHP4O75161 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
NPHP4O75161 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
NPHP4O75161 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC26.21■■□□□ 1.79
NPHP4O75161 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC26.21■■□□□ 1.79
Retrieved 100 of 98,524 protein–RNA pairs in 43.8 ms