Protein–RNA interactions for Protein: A0PJX4

SHISA3, Protein shisa-3 homolog, humanhuman

Predictions only

Length 238 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHISA3A0PJX4 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC16.3■□□□□ 0.2
SHISA3A0PJX4 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SHISA3A0PJX4 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SHISA3A0PJX4 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SHISA3A0PJX4 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC16.3■□□□□ 0.2
SHISA3A0PJX4 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SHISA3A0PJX4 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SHISA3A0PJX4 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC16.3■□□□□ 0.2
SHISA3A0PJX4 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SHISA3A0PJX4 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SHISA3A0PJX4 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SHISA3A0PJX4 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SHISA3A0PJX4 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SHISA3A0PJX4 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SHISA3A0PJX4 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SHISA3A0PJX4 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC16.29■□□□□ 0.2
SHISA3A0PJX4 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC16.29■□□□□ 0.2
SHISA3A0PJX4 KRT8P45-201ENST00000414328 1447 ntBASIC16.29■□□□□ 0.2
SHISA3A0PJX4 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC16.29■□□□□ 0.2
SHISA3A0PJX4 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SHISA3A0PJX4 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC16.29■□□□□ 0.2
SHISA3A0PJX4 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SHISA3A0PJX4 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SHISA3A0PJX4 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
SHISA3A0PJX4 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC16.29■□□□□ 0.2
SHISA3A0PJX4 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
SHISA3A0PJX4 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SHISA3A0PJX4 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SHISA3A0PJX4 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SHISA3A0PJX4 AC004911.1-201ENST00000416316 871 ntBASIC16.29■□□□□ 0.2
SHISA3A0PJX4 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC16.29■□□□□ 0.2
SHISA3A0PJX4 GLI3-203ENST00000437480 451 ntTSL 2 BASIC16.29■□□□□ 0.2
SHISA3A0PJX4 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC16.29■□□□□ 0.2
SHISA3A0PJX4 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC16.29■□□□□ 0.2
SHISA3A0PJX4 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC16.29■□□□□ 0.2
SHISA3A0PJX4 BANP-227ENST00000626016 2144 ntTSL 2 BASIC16.29■□□□□ 0.2
SHISA3A0PJX4 HLA-A-209ENST00000638375 975 ntBASIC16.29■□□□□ 0.2
SHISA3A0PJX4 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC16.29■□□□□ 0.2
SHISA3A0PJX4 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SHISA3A0PJX4 AC022211.2-201ENST00000585075 2527 ntBASIC16.29■□□□□ 0.2
SHISA3A0PJX4 AC141586.5-201ENST00000624546 2050 ntBASIC16.29■□□□□ 0.2
SHISA3A0PJX4 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SHISA3A0PJX4 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC16.29■□□□□ 0.2
SHISA3A0PJX4 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC16.29■□□□□ 0.2
SHISA3A0PJX4 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC16.29■□□□□ 0.2
SHISA3A0PJX4 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
SHISA3A0PJX4 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SHISA3A0PJX4 KRT8P41-201ENST00000533985 1514 ntBASIC16.29■□□□□ 0.2
SHISA3A0PJX4 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC16.29■□□□□ 0.2
SHISA3A0PJX4 KRT8P32-201ENST00000512863 1461 ntBASIC16.29■□□□□ 0.2
SHISA3A0PJX4 KATNBL1P6-202ENST00000562413 1466 ntBASIC16.29■□□□□ 0.2
SHISA3A0PJX4 AL357033.4-201ENST00000617703 1807 ntBASIC16.29■□□□□ 0.2
SHISA3A0PJX4 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SHISA3A0PJX4 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC16.28■□□□□ 0.2
SHISA3A0PJX4 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC16.28■□□□□ 0.2
SHISA3A0PJX4 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
SHISA3A0PJX4 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SHISA3A0PJX4 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
SHISA3A0PJX4 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
SHISA3A0PJX4 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SHISA3A0PJX4 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC16.28■□□□□ 0.2
SHISA3A0PJX4 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC16.28■□□□□ 0.2
SHISA3A0PJX4 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SHISA3A0PJX4 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC16.28■□□□□ 0.2
SHISA3A0PJX4 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SHISA3A0PJX4 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC16.28■□□□□ 0.2
SHISA3A0PJX4 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC16.28■□□□□ 0.2
SHISA3A0PJX4 RHOD-202ENST00000532559 538 ntTSL 3 BASIC16.28■□□□□ 0.2
SHISA3A0PJX4 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
SHISA3A0PJX4 AL160286.2-201ENST00000567150 934 ntBASIC16.28■□□□□ 0.2
SHISA3A0PJX4 MDK-213ENST00000617138 635 ntTSL 2 BASIC16.28■□□□□ 0.2
SHISA3A0PJX4 AL050303.2-201ENST00000619798 666 ntBASIC16.28■□□□□ 0.2
SHISA3A0PJX4 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
SHISA3A0PJX4 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
SHISA3A0PJX4 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SHISA3A0PJX4 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
SHISA3A0PJX4 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SHISA3A0PJX4 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
SHISA3A0PJX4 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC16.28■□□□□ 0.2
SHISA3A0PJX4 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SHISA3A0PJX4 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SHISA3A0PJX4 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
SHISA3A0PJX4 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
SHISA3A0PJX4 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
SHISA3A0PJX4 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC16.27■□□□□ 0.2
SHISA3A0PJX4 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC16.27■□□□□ 0.2
SHISA3A0PJX4 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
SHISA3A0PJX4 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.2
SHISA3A0PJX4 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.2
SHISA3A0PJX4 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
SHISA3A0PJX4 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
SHISA3A0PJX4 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC16.27■□□□□ 0.2
SHISA3A0PJX4 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
SHISA3A0PJX4 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC16.27■□□□□ 0.2
SHISA3A0PJX4 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
SHISA3A0PJX4 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
SHISA3A0PJX4 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC16.27■□□□□ 0.2
SHISA3A0PJX4 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
SHISA3A0PJX4 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
SHISA3A0PJX4 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms