Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VPS9D1Q9Y2B5 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
VPS9D1Q9Y2B5 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
VPS9D1Q9Y2B5 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
VPS9D1Q9Y2B5 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
VPS9D1Q9Y2B5 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
VPS9D1Q9Y2B5 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC18.61■□□□□ 0.57
VPS9D1Q9Y2B5 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
VPS9D1Q9Y2B5 AC090164.3-201ENST00000610780 2143 ntBASIC18.61■□□□□ 0.57
VPS9D1Q9Y2B5 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC18.61■□□□□ 0.57
VPS9D1Q9Y2B5 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC18.61■□□□□ 0.57
VPS9D1Q9Y2B5 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC18.61■□□□□ 0.57
VPS9D1Q9Y2B5 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
VPS9D1Q9Y2B5 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC18.61■□□□□ 0.57
VPS9D1Q9Y2B5 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
VPS9D1Q9Y2B5 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
VPS9D1Q9Y2B5 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
VPS9D1Q9Y2B5 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
VPS9D1Q9Y2B5 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC18.61■□□□□ 0.57
VPS9D1Q9Y2B5 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC18.61■□□□□ 0.57
VPS9D1Q9Y2B5 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
VPS9D1Q9Y2B5 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
VPS9D1Q9Y2B5 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
VPS9D1Q9Y2B5 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
VPS9D1Q9Y2B5 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
VPS9D1Q9Y2B5 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC18.61■□□□□ 0.57
VPS9D1Q9Y2B5 ENSA-205ENST00000361532 792 ntTSL 2 BASIC18.61■□□□□ 0.57
VPS9D1Q9Y2B5 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
VPS9D1Q9Y2B5 CRYGFP-201ENST00000418459 633 ntBASIC18.61■□□□□ 0.57
VPS9D1Q9Y2B5 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
VPS9D1Q9Y2B5 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
VPS9D1Q9Y2B5 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
VPS9D1Q9Y2B5 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC18.61■□□□□ 0.57
VPS9D1Q9Y2B5 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
VPS9D1Q9Y2B5 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
VPS9D1Q9Y2B5 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
VPS9D1Q9Y2B5 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC18.61■□□□□ 0.57
VPS9D1Q9Y2B5 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
VPS9D1Q9Y2B5 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC18.61■□□□□ 0.57
VPS9D1Q9Y2B5 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
VPS9D1Q9Y2B5 AC073592.3-201ENST00000625118 1834 ntBASIC18.6■□□□□ 0.57
VPS9D1Q9Y2B5 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
VPS9D1Q9Y2B5 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC18.6■□□□□ 0.57
VPS9D1Q9Y2B5 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC18.6■□□□□ 0.57
VPS9D1Q9Y2B5 USP49-202ENST00000373010 2446 ntTSL 5 BASIC18.6■□□□□ 0.57
VPS9D1Q9Y2B5 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
VPS9D1Q9Y2B5 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
VPS9D1Q9Y2B5 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC18.6■□□□□ 0.57
VPS9D1Q9Y2B5 KRT17P2-201ENST00000300992 1314 ntBASIC18.6■□□□□ 0.57
VPS9D1Q9Y2B5 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC18.6■□□□□ 0.57
VPS9D1Q9Y2B5 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC18.6■□□□□ 0.57
VPS9D1Q9Y2B5 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC18.6■□□□□ 0.57
VPS9D1Q9Y2B5 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC18.6■□□□□ 0.57
VPS9D1Q9Y2B5 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC18.6■□□□□ 0.57
VPS9D1Q9Y2B5 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
VPS9D1Q9Y2B5 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC18.6■□□□□ 0.57
VPS9D1Q9Y2B5 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
VPS9D1Q9Y2B5 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC18.6■□□□□ 0.57
VPS9D1Q9Y2B5 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
VPS9D1Q9Y2B5 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
VPS9D1Q9Y2B5 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC18.6■□□□□ 0.57
VPS9D1Q9Y2B5 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
VPS9D1Q9Y2B5 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
VPS9D1Q9Y2B5 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
VPS9D1Q9Y2B5 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
VPS9D1Q9Y2B5 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
VPS9D1Q9Y2B5 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
VPS9D1Q9Y2B5 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC18.59■□□□□ 0.57
VPS9D1Q9Y2B5 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
VPS9D1Q9Y2B5 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
VPS9D1Q9Y2B5 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
VPS9D1Q9Y2B5 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC18.59■□□□□ 0.57
VPS9D1Q9Y2B5 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC18.59■□□□□ 0.57
VPS9D1Q9Y2B5 AL357033.4-201ENST00000617703 1807 ntBASIC18.59■□□□□ 0.57
VPS9D1Q9Y2B5 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC18.59■□□□□ 0.57
VPS9D1Q9Y2B5 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC18.59■□□□□ 0.57
VPS9D1Q9Y2B5 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
VPS9D1Q9Y2B5 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
VPS9D1Q9Y2B5 MCCD1P1-208ENST00000445732 328 ntBASIC18.59■□□□□ 0.57
VPS9D1Q9Y2B5 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC18.59■□□□□ 0.57
VPS9D1Q9Y2B5 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC18.59■□□□□ 0.57
VPS9D1Q9Y2B5 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
VPS9D1Q9Y2B5 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC18.59■□□□□ 0.57
VPS9D1Q9Y2B5 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC18.59■□□□□ 0.57
VPS9D1Q9Y2B5 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
VPS9D1Q9Y2B5 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
VPS9D1Q9Y2B5 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC18.59■□□□□ 0.57
VPS9D1Q9Y2B5 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
VPS9D1Q9Y2B5 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
VPS9D1Q9Y2B5 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC18.59■□□□□ 0.57
VPS9D1Q9Y2B5 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC18.58■□□□□ 0.57
VPS9D1Q9Y2B5 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
VPS9D1Q9Y2B5 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
VPS9D1Q9Y2B5 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.57
VPS9D1Q9Y2B5 KRT8P45-201ENST00000414328 1447 ntBASIC18.58■□□□□ 0.57
VPS9D1Q9Y2B5 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
VPS9D1Q9Y2B5 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
VPS9D1Q9Y2B5 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
VPS9D1Q9Y2B5 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.57
VPS9D1Q9Y2B5 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 36.1 ms