Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC19.5■□□□□ 0.71
LIMD1Q9UGP4 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
LIMD1Q9UGP4 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
LIMD1Q9UGP4 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
LIMD1Q9UGP4 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC19.5■□□□□ 0.71
LIMD1Q9UGP4 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC19.5■□□□□ 0.71
LIMD1Q9UGP4 MRPL3P1-201ENST00000400109 1033 ntBASIC19.5■□□□□ 0.71
LIMD1Q9UGP4 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC19.5■□□□□ 0.71
LIMD1Q9UGP4 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC19.5■□□□□ 0.71
LIMD1Q9UGP4 AL662844.1-201ENST00000546340 181 ntBASIC19.5■□□□□ 0.71
LIMD1Q9UGP4 BMF-207ENST00000559701 630 ntTSL 3 BASIC19.5■□□□□ 0.71
LIMD1Q9UGP4 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
LIMD1Q9UGP4 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC19.5■□□□□ 0.71
LIMD1Q9UGP4 MIR3180-5-201ENST00000583743 153 ntBASIC19.5■□□□□ 0.71
LIMD1Q9UGP4 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC19.5■□□□□ 0.71
LIMD1Q9UGP4 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
LIMD1Q9UGP4 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
LIMD1Q9UGP4 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
LIMD1Q9UGP4 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
LIMD1Q9UGP4 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
LIMD1Q9UGP4 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
LIMD1Q9UGP4 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
LIMD1Q9UGP4 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
LIMD1Q9UGP4 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
LIMD1Q9UGP4 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
LIMD1Q9UGP4 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
LIMD1Q9UGP4 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC19.49■□□□□ 0.71
LIMD1Q9UGP4 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
LIMD1Q9UGP4 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC19.49■□□□□ 0.71
LIMD1Q9UGP4 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC19.49■□□□□ 0.71
LIMD1Q9UGP4 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC19.49■□□□□ 0.71
LIMD1Q9UGP4 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
LIMD1Q9UGP4 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
LIMD1Q9UGP4 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC19.49■□□□□ 0.71
LIMD1Q9UGP4 MCCD1P1-208ENST00000445732 328 ntBASIC19.49■□□□□ 0.71
LIMD1Q9UGP4 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC19.49■□□□□ 0.71
LIMD1Q9UGP4 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC19.49■□□□□ 0.71
LIMD1Q9UGP4 MIR3917-201ENST00000580971 93 ntBASIC19.49■□□□□ 0.71
LIMD1Q9UGP4 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC19.49■□□□□ 0.71
LIMD1Q9UGP4 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC19.49■□□□□ 0.71
LIMD1Q9UGP4 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC19.49■□□□□ 0.71
LIMD1Q9UGP4 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
LIMD1Q9UGP4 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
LIMD1Q9UGP4 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC19.49■□□□□ 0.71
LIMD1Q9UGP4 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
LIMD1Q9UGP4 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC19.49■□□□□ 0.71
LIMD1Q9UGP4 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC19.49■□□□□ 0.71
LIMD1Q9UGP4 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
LIMD1Q9UGP4 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
LIMD1Q9UGP4 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
LIMD1Q9UGP4 DET1-207ENST00000564406 2315 ntTSL 2 BASIC19.48■□□□□ 0.71
LIMD1Q9UGP4 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC19.48■□□□□ 0.71
LIMD1Q9UGP4 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
LIMD1Q9UGP4 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
LIMD1Q9UGP4 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
LIMD1Q9UGP4 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
LIMD1Q9UGP4 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
LIMD1Q9UGP4 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
LIMD1Q9UGP4 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
LIMD1Q9UGP4 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
LIMD1Q9UGP4 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
LIMD1Q9UGP4 DFFB-203ENST00000341385 572 ntTSL 5 BASIC19.48■□□□□ 0.71
LIMD1Q9UGP4 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC19.48■□□□□ 0.71
LIMD1Q9UGP4 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC19.48■□□□□ 0.71
LIMD1Q9UGP4 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC19.48■□□□□ 0.71
LIMD1Q9UGP4 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC19.48■□□□□ 0.71
LIMD1Q9UGP4 AC104819.1-201ENST00000504587 486 ntBASIC19.48■□□□□ 0.71
LIMD1Q9UGP4 TPM1-218ENST00000559281 851 ntTSL 5 BASIC19.48■□□□□ 0.71
LIMD1Q9UGP4 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
LIMD1Q9UGP4 AL121912.1-201ENST00000603683 238 ntBASIC19.48■□□□□ 0.71
LIMD1Q9UGP4 AC138894.3-201ENST00000603787 634 ntBASIC19.48■□□□□ 0.71
LIMD1Q9UGP4 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
LIMD1Q9UGP4 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
LIMD1Q9UGP4 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
LIMD1Q9UGP4 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
LIMD1Q9UGP4 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC19.48■□□□□ 0.71
LIMD1Q9UGP4 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
LIMD1Q9UGP4 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC19.48■□□□□ 0.71
LIMD1Q9UGP4 AC112907.3-201ENST00000577781 2400 ntBASIC19.47■□□□□ 0.71
LIMD1Q9UGP4 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
LIMD1Q9UGP4 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
LIMD1Q9UGP4 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC19.47■□□□□ 0.71
LIMD1Q9UGP4 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC19.47■□□□□ 0.71
LIMD1Q9UGP4 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
LIMD1Q9UGP4 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
LIMD1Q9UGP4 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
LIMD1Q9UGP4 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
LIMD1Q9UGP4 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
LIMD1Q9UGP4 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC19.47■□□□□ 0.71
LIMD1Q9UGP4 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC19.47■□□□□ 0.71
LIMD1Q9UGP4 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC19.47■□□□□ 0.71
LIMD1Q9UGP4 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC19.47■□□□□ 0.71
LIMD1Q9UGP4 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC19.47■□□□□ 0.71
LIMD1Q9UGP4 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC19.47■□□□□ 0.71
LIMD1Q9UGP4 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC19.47■□□□□ 0.71
LIMD1Q9UGP4 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC19.47■□□□□ 0.71
LIMD1Q9UGP4 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
LIMD1Q9UGP4 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
LIMD1Q9UGP4 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
LIMD1Q9UGP4 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC19.47■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms