Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
TM9SF3Q9HD45 AC036111.1-201ENST00000533973 1582 ntBASIC18.71■□□□□ 0.59
TM9SF3Q9HD45 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
TM9SF3Q9HD45 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
TM9SF3Q9HD45 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
TM9SF3Q9HD45 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
TM9SF3Q9HD45 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
TM9SF3Q9HD45 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC18.7■□□□□ 0.58
TM9SF3Q9HD45 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
TM9SF3Q9HD45 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
TM9SF3Q9HD45 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
TM9SF3Q9HD45 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
TM9SF3Q9HD45 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
TM9SF3Q9HD45 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
TM9SF3Q9HD45 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
TM9SF3Q9HD45 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
TM9SF3Q9HD45 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC18.7■□□□□ 0.58
TM9SF3Q9HD45 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
TM9SF3Q9HD45 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC18.7■□□□□ 0.58
TM9SF3Q9HD45 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
TM9SF3Q9HD45 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC18.7■□□□□ 0.58
TM9SF3Q9HD45 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
TM9SF3Q9HD45 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC18.7■□□□□ 0.58
TM9SF3Q9HD45 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
TM9SF3Q9HD45 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
TM9SF3Q9HD45 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
TM9SF3Q9HD45 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
TM9SF3Q9HD45 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
TM9SF3Q9HD45 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
TM9SF3Q9HD45 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
TM9SF3Q9HD45 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
TM9SF3Q9HD45 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC18.69■□□□□ 0.58
TM9SF3Q9HD45 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
TM9SF3Q9HD45 AC026396.1-201ENST00000419388 421 ntBASIC18.69■□□□□ 0.58
TM9SF3Q9HD45 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC18.69■□□□□ 0.58
TM9SF3Q9HD45 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC18.69■□□□□ 0.58
TM9SF3Q9HD45 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
TM9SF3Q9HD45 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
TM9SF3Q9HD45 AC092119.3-201ENST00000612618 583 ntBASIC18.69■□□□□ 0.58
TM9SF3Q9HD45 NPAP1P7-201ENST00000613027 823 ntBASIC18.69■□□□□ 0.58
TM9SF3Q9HD45 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC18.69■□□□□ 0.58
TM9SF3Q9HD45 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
TM9SF3Q9HD45 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
TM9SF3Q9HD45 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
TM9SF3Q9HD45 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
TM9SF3Q9HD45 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC18.69■□□□□ 0.58
TM9SF3Q9HD45 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
TM9SF3Q9HD45 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC18.69■□□□□ 0.58
TM9SF3Q9HD45 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC18.69■□□□□ 0.58
TM9SF3Q9HD45 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TM9SF3Q9HD45 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
TM9SF3Q9HD45 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
TM9SF3Q9HD45 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
TM9SF3Q9HD45 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TM9SF3Q9HD45 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
TM9SF3Q9HD45 GOLGA6L5P-202ENST00000515341 1828 ntBASIC18.68■□□□□ 0.58
TM9SF3Q9HD45 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC18.68■□□□□ 0.58
TM9SF3Q9HD45 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC18.68■□□□□ 0.58
TM9SF3Q9HD45 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
TM9SF3Q9HD45 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
TM9SF3Q9HD45 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
TM9SF3Q9HD45 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC18.68■□□□□ 0.58
TM9SF3Q9HD45 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC18.68■□□□□ 0.58
TM9SF3Q9HD45 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC18.68■□□□□ 0.58
TM9SF3Q9HD45 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC18.68■□□□□ 0.58
TM9SF3Q9HD45 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
TM9SF3Q9HD45 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TM9SF3Q9HD45 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TM9SF3Q9HD45 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TM9SF3Q9HD45 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TM9SF3Q9HD45 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC18.68■□□□□ 0.58
TM9SF3Q9HD45 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
TM9SF3Q9HD45 TREX1-205ENST00000625293 1783 ntBASIC18.68■□□□□ 0.58
TM9SF3Q9HD45 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC18.68■□□□□ 0.58
TM9SF3Q9HD45 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
TM9SF3Q9HD45 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TM9SF3Q9HD45 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
TM9SF3Q9HD45 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
TM9SF3Q9HD45 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
TM9SF3Q9HD45 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TM9SF3Q9HD45 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
TM9SF3Q9HD45 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC18.67■□□□□ 0.58
TM9SF3Q9HD45 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TM9SF3Q9HD45 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC18.67■□□□□ 0.58
TM9SF3Q9HD45 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC18.67■□□□□ 0.58
TM9SF3Q9HD45 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
TM9SF3Q9HD45 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
TM9SF3Q9HD45 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
TM9SF3Q9HD45 GAS2L1P1-201ENST00000420145 1480 ntBASIC18.67■□□□□ 0.58
TM9SF3Q9HD45 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TM9SF3Q9HD45 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TM9SF3Q9HD45 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC18.67■□□□□ 0.58
TM9SF3Q9HD45 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC18.67■□□□□ 0.58
TM9SF3Q9HD45 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
TM9SF3Q9HD45 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC18.67■□□□□ 0.58
TM9SF3Q9HD45 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
TM9SF3Q9HD45 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
TM9SF3Q9HD45 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC18.67■□□□□ 0.58
TM9SF3Q9HD45 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC18.67■□□□□ 0.58
TM9SF3Q9HD45 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms