Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC18.54■□□□□ 0.56
TRIM39Q9HCM9 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
TRIM39Q9HCM9 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
TRIM39Q9HCM9 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
TRIM39Q9HCM9 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
TRIM39Q9HCM9 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
TRIM39Q9HCM9 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
TRIM39Q9HCM9 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC18.53■□□□□ 0.56
TRIM39Q9HCM9 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC18.53■□□□□ 0.56
TRIM39Q9HCM9 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC18.53■□□□□ 0.56
TRIM39Q9HCM9 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
TRIM39Q9HCM9 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
TRIM39Q9HCM9 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
TRIM39Q9HCM9 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC18.53■□□□□ 0.56
TRIM39Q9HCM9 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
TRIM39Q9HCM9 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
TRIM39Q9HCM9 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
TRIM39Q9HCM9 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC18.53■□□□□ 0.56
TRIM39Q9HCM9 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
TRIM39Q9HCM9 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
TRIM39Q9HCM9 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
TRIM39Q9HCM9 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
TRIM39Q9HCM9 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
TRIM39Q9HCM9 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
TRIM39Q9HCM9 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
TRIM39Q9HCM9 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC18.53■□□□□ 0.56
TRIM39Q9HCM9 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
TRIM39Q9HCM9 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC18.53■□□□□ 0.56
TRIM39Q9HCM9 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
TRIM39Q9HCM9 CD70-202ENST00000423145 881 ntTSL 2 BASIC18.53■□□□□ 0.56
TRIM39Q9HCM9 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
TRIM39Q9HCM9 AC104076.2-201ENST00000448912 469 ntBASIC18.53■□□□□ 0.56
TRIM39Q9HCM9 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
TRIM39Q9HCM9 COX11P1-201ENST00000489116 835 ntBASIC18.53■□□□□ 0.56
TRIM39Q9HCM9 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC18.53■□□□□ 0.56
TRIM39Q9HCM9 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC18.53■□□□□ 0.56
TRIM39Q9HCM9 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC18.53■□□□□ 0.56
TRIM39Q9HCM9 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
TRIM39Q9HCM9 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC18.53■□□□□ 0.56
TRIM39Q9HCM9 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC18.53■□□□□ 0.56
TRIM39Q9HCM9 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC18.53■□□□□ 0.56
TRIM39Q9HCM9 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC18.53■□□□□ 0.56
TRIM39Q9HCM9 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC18.53■□□□□ 0.56
TRIM39Q9HCM9 NEK4P2-201ENST00000580004 1012 ntBASIC18.53■□□□□ 0.56
TRIM39Q9HCM9 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC18.53■□□□□ 0.56
TRIM39Q9HCM9 AC008556.1-201ENST00000610908 2040 ntBASIC18.53■□□□□ 0.56
TRIM39Q9HCM9 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC18.53■□□□□ 0.56
TRIM39Q9HCM9 AL031432.5-201ENST00000641059 760 ntBASIC18.53■□□□□ 0.56
TRIM39Q9HCM9 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
TRIM39Q9HCM9 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC18.53■□□□□ 0.56
TRIM39Q9HCM9 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
TRIM39Q9HCM9 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
TRIM39Q9HCM9 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
TRIM39Q9HCM9 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC18.53■□□□□ 0.56
TRIM39Q9HCM9 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC18.53■□□□□ 0.56
TRIM39Q9HCM9 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
TRIM39Q9HCM9 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
TRIM39Q9HCM9 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC18.53■□□□□ 0.56
TRIM39Q9HCM9 USP39-202ENST00000409025 1946 ntTSL 5 BASIC18.53■□□□□ 0.56
TRIM39Q9HCM9 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
TRIM39Q9HCM9 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
TRIM39Q9HCM9 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
TRIM39Q9HCM9 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
TRIM39Q9HCM9 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
TRIM39Q9HCM9 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC18.52■□□□□ 0.56
TRIM39Q9HCM9 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
TRIM39Q9HCM9 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
TRIM39Q9HCM9 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC18.52■□□□□ 0.56
TRIM39Q9HCM9 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC18.52■□□□□ 0.56
TRIM39Q9HCM9 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC18.52■□□□□ 0.56
TRIM39Q9HCM9 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
TRIM39Q9HCM9 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC18.52■□□□□ 0.56
TRIM39Q9HCM9 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
TRIM39Q9HCM9 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
TRIM39Q9HCM9 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
TRIM39Q9HCM9 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
TRIM39Q9HCM9 AP000523.1-201ENST00000398242 1049 ntBASIC18.52■□□□□ 0.56
TRIM39Q9HCM9 AC009947.2-201ENST00000444014 672 ntBASIC18.52■□□□□ 0.56
TRIM39Q9HCM9 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC18.52■□□□□ 0.56
TRIM39Q9HCM9 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC18.52■□□□□ 0.56
TRIM39Q9HCM9 NT5C-210ENST00000582160 860 ntTSL 2 BASIC18.52■□□□□ 0.56
TRIM39Q9HCM9 RBM42-202ENST00000586618 771 ntTSL 3 BASIC18.52■□□□□ 0.56
TRIM39Q9HCM9 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC18.52■□□□□ 0.56
TRIM39Q9HCM9 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.56
TRIM39Q9HCM9 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
TRIM39Q9HCM9 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC18.52■□□□□ 0.56
TRIM39Q9HCM9 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
TRIM39Q9HCM9 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
TRIM39Q9HCM9 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC18.52■□□□□ 0.55
TRIM39Q9HCM9 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.55
TRIM39Q9HCM9 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC18.52■□□□□ 0.55
TRIM39Q9HCM9 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
TRIM39Q9HCM9 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
TRIM39Q9HCM9 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
TRIM39Q9HCM9 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
TRIM39Q9HCM9 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
TRIM39Q9HCM9 AC036111.1-201ENST00000533973 1582 ntBASIC18.51■□□□□ 0.55
TRIM39Q9HCM9 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
TRIM39Q9HCM9 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
TRIM39Q9HCM9 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms