Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC20.48■□□□□ 0.87
TRAIPQ9BWF2 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC20.48■□□□□ 0.87
TRAIPQ9BWF2 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
TRAIPQ9BWF2 VENTXP5-201ENST00000523979 775 ntBASIC20.48■□□□□ 0.87
TRAIPQ9BWF2 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
TRAIPQ9BWF2 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
TRAIPQ9BWF2 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC20.48■□□□□ 0.87
TRAIPQ9BWF2 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
TRAIPQ9BWF2 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
TRAIPQ9BWF2 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
TRAIPQ9BWF2 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC20.48■□□□□ 0.87
TRAIPQ9BWF2 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
TRAIPQ9BWF2 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC20.48■□□□□ 0.87
TRAIPQ9BWF2 AL109659.2-201ENST00000606809 1674 ntBASIC20.48■□□□□ 0.87
TRAIPQ9BWF2 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
TRAIPQ9BWF2 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
TRAIPQ9BWF2 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC20.48■□□□□ 0.87
TRAIPQ9BWF2 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
TRAIPQ9BWF2 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
TRAIPQ9BWF2 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
TRAIPQ9BWF2 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC20.47■□□□□ 0.87
TRAIPQ9BWF2 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
TRAIPQ9BWF2 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
TRAIPQ9BWF2 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
TRAIPQ9BWF2 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC20.47■□□□□ 0.87
TRAIPQ9BWF2 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
TRAIPQ9BWF2 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC20.47■□□□□ 0.87
TRAIPQ9BWF2 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
TRAIPQ9BWF2 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
TRAIPQ9BWF2 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
TRAIPQ9BWF2 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
TRAIPQ9BWF2 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
TRAIPQ9BWF2 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
TRAIPQ9BWF2 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
TRAIPQ9BWF2 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
TRAIPQ9BWF2 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC20.47■□□□□ 0.87
TRAIPQ9BWF2 SPDYE13P-201ENST00000445314 798 ntBASIC20.47■□□□□ 0.87
TRAIPQ9BWF2 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
TRAIPQ9BWF2 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC20.47■□□□□ 0.87
TRAIPQ9BWF2 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
TRAIPQ9BWF2 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
TRAIPQ9BWF2 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
TRAIPQ9BWF2 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
TRAIPQ9BWF2 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
TRAIPQ9BWF2 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC20.47■□□□□ 0.87
TRAIPQ9BWF2 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
TRAIPQ9BWF2 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
TRAIPQ9BWF2 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
TRAIPQ9BWF2 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
TRAIPQ9BWF2 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
TRAIPQ9BWF2 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
TRAIPQ9BWF2 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC20.47■□□□□ 0.87
TRAIPQ9BWF2 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
TRAIPQ9BWF2 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC20.47■□□□□ 0.87
TRAIPQ9BWF2 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC20.47■□□□□ 0.87
TRAIPQ9BWF2 AC036111.1-201ENST00000533973 1582 ntBASIC20.46■□□□□ 0.87
TRAIPQ9BWF2 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC20.46■□□□□ 0.87
TRAIPQ9BWF2 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
TRAIPQ9BWF2 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC20.46■□□□□ 0.87
TRAIPQ9BWF2 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC20.46■□□□□ 0.87
TRAIPQ9BWF2 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC20.46■□□□□ 0.87
TRAIPQ9BWF2 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC20.46■□□□□ 0.87
TRAIPQ9BWF2 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
TRAIPQ9BWF2 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC20.46■□□□□ 0.87
TRAIPQ9BWF2 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC20.46■□□□□ 0.87
TRAIPQ9BWF2 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
TRAIPQ9BWF2 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
TRAIPQ9BWF2 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
TRAIPQ9BWF2 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
TRAIPQ9BWF2 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
TRAIPQ9BWF2 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC20.46■□□□□ 0.87
TRAIPQ9BWF2 USF2-205ENST00000594064 1179 ntTSL 2 BASIC20.46■□□□□ 0.87
TRAIPQ9BWF2 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC20.46■□□□□ 0.87
TRAIPQ9BWF2 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC20.46■□□□□ 0.87
TRAIPQ9BWF2 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC20.46■□□□□ 0.87
TRAIPQ9BWF2 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
TRAIPQ9BWF2 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC20.46■□□□□ 0.87
TRAIPQ9BWF2 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
TRAIPQ9BWF2 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
TRAIPQ9BWF2 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
TRAIPQ9BWF2 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
TRAIPQ9BWF2 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
TRAIPQ9BWF2 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC20.46■□□□□ 0.87
TRAIPQ9BWF2 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.87
TRAIPQ9BWF2 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
TRAIPQ9BWF2 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC20.45■□□□□ 0.86
TRAIPQ9BWF2 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
TRAIPQ9BWF2 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TRAIPQ9BWF2 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
TRAIPQ9BWF2 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
TRAIPQ9BWF2 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TRAIPQ9BWF2 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC20.45■□□□□ 0.86
TRAIPQ9BWF2 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC20.45■□□□□ 0.86
TRAIPQ9BWF2 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TRAIPQ9BWF2 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TRAIPQ9BWF2 FEM1AP3-201ENST00000403722 1741 ntBASIC20.45■□□□□ 0.86
TRAIPQ9BWF2 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
TRAIPQ9BWF2 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TRAIPQ9BWF2 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TRAIPQ9BWF2 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC20.45■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms