Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC18.21■□□□□ 0.51
CCDC28BQ9BUN5 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC18.21■□□□□ 0.51
CCDC28BQ9BUN5 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC18.21■□□□□ 0.51
CCDC28BQ9BUN5 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC18.21■□□□□ 0.51
CCDC28BQ9BUN5 BET1L-207ENST00000529614 560 ntTSL 5 BASIC18.21■□□□□ 0.51
CCDC28BQ9BUN5 PNMA6B-201ENST00000538162 1200 ntBASIC18.21■□□□□ 0.51
CCDC28BQ9BUN5 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC18.21■□□□□ 0.51
CCDC28BQ9BUN5 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC18.21■□□□□ 0.51
CCDC28BQ9BUN5 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC18.21■□□□□ 0.51
CCDC28BQ9BUN5 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC18.21■□□□□ 0.51
CCDC28BQ9BUN5 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CCDC28BQ9BUN5 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC18.21■□□□□ 0.51
CCDC28BQ9BUN5 HLA-A-209ENST00000638375 975 ntBASIC18.21■□□□□ 0.51
CCDC28BQ9BUN5 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
CCDC28BQ9BUN5 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC18.21■□□□□ 0.51
CCDC28BQ9BUN5 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
CCDC28BQ9BUN5 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC18.21■□□□□ 0.51
CCDC28BQ9BUN5 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
CCDC28BQ9BUN5 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
CCDC28BQ9BUN5 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
CCDC28BQ9BUN5 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
CCDC28BQ9BUN5 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CCDC28BQ9BUN5 KATNBL1P6-202ENST00000562413 1466 ntBASIC18.2■□□□□ 0.5
CCDC28BQ9BUN5 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CCDC28BQ9BUN5 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC18.2■□□□□ 0.5
CCDC28BQ9BUN5 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC18.2■□□□□ 0.5
CCDC28BQ9BUN5 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CCDC28BQ9BUN5 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CCDC28BQ9BUN5 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CCDC28BQ9BUN5 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
CCDC28BQ9BUN5 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC18.2■□□□□ 0.5
CCDC28BQ9BUN5 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC18.2■□□□□ 0.5
CCDC28BQ9BUN5 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC18.2■□□□□ 0.5
CCDC28BQ9BUN5 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
CCDC28BQ9BUN5 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
CCDC28BQ9BUN5 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC18.2■□□□□ 0.5
CCDC28BQ9BUN5 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CCDC28BQ9BUN5 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC18.2■□□□□ 0.5
CCDC28BQ9BUN5 AL162430.1-201ENST00000480705 870 ntBASIC18.2■□□□□ 0.5
CCDC28BQ9BUN5 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC18.2■□□□□ 0.5
CCDC28BQ9BUN5 AC060766.5-201ENST00000590539 871 ntBASIC18.2■□□□□ 0.5
CCDC28BQ9BUN5 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC18.2■□□□□ 0.5
CCDC28BQ9BUN5 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC18.2■□□□□ 0.5
CCDC28BQ9BUN5 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
CCDC28BQ9BUN5 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
CCDC28BQ9BUN5 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC18.2■□□□□ 0.5
CCDC28BQ9BUN5 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC18.2■□□□□ 0.5
CCDC28BQ9BUN5 AL499627.1-201ENST00000569373 2188 ntBASIC18.2■□□□□ 0.5
CCDC28BQ9BUN5 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
CCDC28BQ9BUN5 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC28BQ9BUN5 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC18.19■□□□□ 0.5
CCDC28BQ9BUN5 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC28BQ9BUN5 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC18.19■□□□□ 0.5
CCDC28BQ9BUN5 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC28BQ9BUN5 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC28BQ9BUN5 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC28BQ9BUN5 GNAS-203ENST00000306120 1878 ntBASIC18.19■□□□□ 0.5
CCDC28BQ9BUN5 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC28BQ9BUN5 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
CCDC28BQ9BUN5 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
CCDC28BQ9BUN5 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC28BQ9BUN5 MIR663A-201ENST00000385250 93 ntBASIC18.19■□□□□ 0.5
CCDC28BQ9BUN5 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC28BQ9BUN5 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC28BQ9BUN5 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC18.19■□□□□ 0.5
CCDC28BQ9BUN5 CDCA4P2-201ENST00000441182 718 ntBASIC18.19■□□□□ 0.5
CCDC28BQ9BUN5 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC18.19■□□□□ 0.5
CCDC28BQ9BUN5 OR2A1-AS1-207ENST00000486094 819 ntBASIC18.19■□□□□ 0.5
CCDC28BQ9BUN5 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC18.19■□□□□ 0.5
CCDC28BQ9BUN5 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC28BQ9BUN5 AC022517.1-201ENST00000592429 346 ntBASIC18.19■□□□□ 0.5
CCDC28BQ9BUN5 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC28BQ9BUN5 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
CCDC28BQ9BUN5 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC28BQ9BUN5 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC18.19■□□□□ 0.5
CCDC28BQ9BUN5 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
CCDC28BQ9BUN5 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC28BQ9BUN5 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
CCDC28BQ9BUN5 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC18.19■□□□□ 0.5
CCDC28BQ9BUN5 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC18.19■□□□□ 0.5
CCDC28BQ9BUN5 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
CCDC28BQ9BUN5 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC18.19■□□□□ 0.5
CCDC28BQ9BUN5 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CCDC28BQ9BUN5 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC18.18■□□□□ 0.5
CCDC28BQ9BUN5 AC135776.1-201ENST00000319817 2481 ntBASIC18.18■□□□□ 0.5
CCDC28BQ9BUN5 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC18.18■□□□□ 0.5
CCDC28BQ9BUN5 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC28BQ9BUN5 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC28BQ9BUN5 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC28BQ9BUN5 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC28BQ9BUN5 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC28BQ9BUN5 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC28BQ9BUN5 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC28BQ9BUN5 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC18.18■□□□□ 0.5
CCDC28BQ9BUN5 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC18.18■□□□□ 0.5
CCDC28BQ9BUN5 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC18.18■□□□□ 0.5
CCDC28BQ9BUN5 AC112777.1-201ENST00000540175 1423 ntBASIC18.18■□□□□ 0.5
CCDC28BQ9BUN5 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC18.18■□□□□ 0.5
CCDC28BQ9BUN5 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CCDC28BQ9BUN5 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms