Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 AC005332.8-201ENST00000622750 2735 ntBASIC19.1■□□□□ 0.65
TRIM56Q9BRZ2 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC19.1■□□□□ 0.65
TRIM56Q9BRZ2 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
TRIM56Q9BRZ2 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
TRIM56Q9BRZ2 KRT8P11-201ENST00000409686 1436 ntBASIC19.1■□□□□ 0.65
TRIM56Q9BRZ2 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
TRIM56Q9BRZ2 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
TRIM56Q9BRZ2 PRORSD1P-201ENST00000295112 541 ntBASIC19.1■□□□□ 0.65
TRIM56Q9BRZ2 KRT18P29-201ENST00000397031 1267 ntBASIC19.1■□□□□ 0.65
TRIM56Q9BRZ2 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC19.1■□□□□ 0.65
TRIM56Q9BRZ2 AC133681.1-201ENST00000465482 601 ntBASIC19.1■□□□□ 0.65
TRIM56Q9BRZ2 RPS2P4-201ENST00000476944 856 ntBASIC19.1■□□□□ 0.65
TRIM56Q9BRZ2 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC19.1■□□□□ 0.65
TRIM56Q9BRZ2 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC19.1■□□□□ 0.65
TRIM56Q9BRZ2 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
TRIM56Q9BRZ2 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC19.1■□□□□ 0.65
TRIM56Q9BRZ2 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC19.1■□□□□ 0.65
TRIM56Q9BRZ2 AC110285.5-201ENST00000611501 352 ntBASIC19.1■□□□□ 0.65
TRIM56Q9BRZ2 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
TRIM56Q9BRZ2 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC19.1■□□□□ 0.65
TRIM56Q9BRZ2 AC135050.7-201ENST00000624508 2218 ntBASIC19.1■□□□□ 0.65
TRIM56Q9BRZ2 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
TRIM56Q9BRZ2 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
TRIM56Q9BRZ2 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC19.1■□□□□ 0.65
TRIM56Q9BRZ2 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
TRIM56Q9BRZ2 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC19.1■□□□□ 0.65
TRIM56Q9BRZ2 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
TRIM56Q9BRZ2 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
TRIM56Q9BRZ2 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
TRIM56Q9BRZ2 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
TRIM56Q9BRZ2 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
TRIM56Q9BRZ2 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC19.09■□□□□ 0.65
TRIM56Q9BRZ2 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
TRIM56Q9BRZ2 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
TRIM56Q9BRZ2 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC19.09■□□□□ 0.65
TRIM56Q9BRZ2 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
TRIM56Q9BRZ2 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
TRIM56Q9BRZ2 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
TRIM56Q9BRZ2 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
TRIM56Q9BRZ2 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
TRIM56Q9BRZ2 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
TRIM56Q9BRZ2 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC19.09■□□□□ 0.65
TRIM56Q9BRZ2 AC004980.1-204ENST00000429707 299 ntBASIC19.09■□□□□ 0.65
TRIM56Q9BRZ2 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
TRIM56Q9BRZ2 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
TRIM56Q9BRZ2 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC19.09■□□□□ 0.65
TRIM56Q9BRZ2 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC19.09■□□□□ 0.65
TRIM56Q9BRZ2 ABBA01031674.1-201ENST00000635145 728 ntBASIC19.09■□□□□ 0.65
TRIM56Q9BRZ2 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC19.09■□□□□ 0.65
TRIM56Q9BRZ2 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
TRIM56Q9BRZ2 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
TRIM56Q9BRZ2 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
TRIM56Q9BRZ2 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC19.09■□□□□ 0.65
TRIM56Q9BRZ2 AL133373.2-201ENST00000623187 2828 ntBASIC19.09■□□□□ 0.65
TRIM56Q9BRZ2 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC19.09■□□□□ 0.65
TRIM56Q9BRZ2 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
TRIM56Q9BRZ2 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
TRIM56Q9BRZ2 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
TRIM56Q9BRZ2 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
TRIM56Q9BRZ2 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.65
TRIM56Q9BRZ2 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC19.08■□□□□ 0.65
TRIM56Q9BRZ2 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
TRIM56Q9BRZ2 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC19.08■□□□□ 0.65
TRIM56Q9BRZ2 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
TRIM56Q9BRZ2 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC19.08■□□□□ 0.65
TRIM56Q9BRZ2 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
TRIM56Q9BRZ2 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
TRIM56Q9BRZ2 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
TRIM56Q9BRZ2 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC19.08■□□□□ 0.64
TRIM56Q9BRZ2 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
TRIM56Q9BRZ2 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC19.08■□□□□ 0.64
TRIM56Q9BRZ2 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC19.08■□□□□ 0.64
TRIM56Q9BRZ2 C1QBPP2-201ENST00000528754 825 ntBASIC19.08■□□□□ 0.64
TRIM56Q9BRZ2 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
TRIM56Q9BRZ2 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC19.08■□□□□ 0.64
TRIM56Q9BRZ2 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
TRIM56Q9BRZ2 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.64
TRIM56Q9BRZ2 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC19.08■□□□□ 0.64
TRIM56Q9BRZ2 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC19.08■□□□□ 0.64
TRIM56Q9BRZ2 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
TRIM56Q9BRZ2 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
TRIM56Q9BRZ2 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
TRIM56Q9BRZ2 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
TRIM56Q9BRZ2 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC19.07■□□□□ 0.64
TRIM56Q9BRZ2 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
TRIM56Q9BRZ2 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
TRIM56Q9BRZ2 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
TRIM56Q9BRZ2 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
TRIM56Q9BRZ2 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
TRIM56Q9BRZ2 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
TRIM56Q9BRZ2 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
TRIM56Q9BRZ2 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
TRIM56Q9BRZ2 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
TRIM56Q9BRZ2 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC19.07■□□□□ 0.64
TRIM56Q9BRZ2 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC19.07■□□□□ 0.64
TRIM56Q9BRZ2 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
TRIM56Q9BRZ2 AL445675.2-201ENST00000620291 557 ntBASIC19.07■□□□□ 0.64
TRIM56Q9BRZ2 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
TRIM56Q9BRZ2 HR-201ENST00000312841 5351 ntTSL 5 BASIC19.07■□□□□ 0.64
TRIM56Q9BRZ2 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC19.07■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms