Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
PAAF1Q9BRP4 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
PAAF1Q9BRP4 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
PAAF1Q9BRP4 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC19.95■□□□□ 0.78
PAAF1Q9BRP4 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC19.95■□□□□ 0.78
PAAF1Q9BRP4 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
PAAF1Q9BRP4 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
PAAF1Q9BRP4 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
PAAF1Q9BRP4 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC19.95■□□□□ 0.78
PAAF1Q9BRP4 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC19.95■□□□□ 0.78
PAAF1Q9BRP4 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC19.95■□□□□ 0.78
PAAF1Q9BRP4 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC19.95■□□□□ 0.78
PAAF1Q9BRP4 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
PAAF1Q9BRP4 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
PAAF1Q9BRP4 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
PAAF1Q9BRP4 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
PAAF1Q9BRP4 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
PAAF1Q9BRP4 Z98044.1-201ENST00000632503 1764 ntBASIC19.95■□□□□ 0.78
PAAF1Q9BRP4 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC19.95■□□□□ 0.78
PAAF1Q9BRP4 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
PAAF1Q9BRP4 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
PAAF1Q9BRP4 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
PAAF1Q9BRP4 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC19.94■□□□□ 0.78
PAAF1Q9BRP4 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
PAAF1Q9BRP4 PTGES2-AS1-201ENST00000443493 2100 ntBASIC19.94■□□□□ 0.78
PAAF1Q9BRP4 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC19.94■□□□□ 0.78
PAAF1Q9BRP4 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
PAAF1Q9BRP4 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
PAAF1Q9BRP4 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
PAAF1Q9BRP4 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC19.94■□□□□ 0.78
PAAF1Q9BRP4 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
PAAF1Q9BRP4 AP002383.4-201ENST00000442518 975 ntBASIC19.94■□□□□ 0.78
PAAF1Q9BRP4 TSSC2-201ENST00000450217 709 ntBASIC19.94■□□□□ 0.78
PAAF1Q9BRP4 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC19.94■□□□□ 0.78
PAAF1Q9BRP4 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
PAAF1Q9BRP4 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC19.94■□□□□ 0.78
PAAF1Q9BRP4 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC19.94■□□□□ 0.78
PAAF1Q9BRP4 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC19.94■□□□□ 0.78
PAAF1Q9BRP4 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC19.94■□□□□ 0.78
PAAF1Q9BRP4 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
PAAF1Q9BRP4 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC19.94■□□□□ 0.78
PAAF1Q9BRP4 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
PAAF1Q9BRP4 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
PAAF1Q9BRP4 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC19.94■□□□□ 0.78
PAAF1Q9BRP4 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
PAAF1Q9BRP4 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
PAAF1Q9BRP4 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
PAAF1Q9BRP4 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
PAAF1Q9BRP4 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
PAAF1Q9BRP4 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
PAAF1Q9BRP4 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
PAAF1Q9BRP4 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC19.93■□□□□ 0.78
PAAF1Q9BRP4 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC19.93■□□□□ 0.78
PAAF1Q9BRP4 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC19.93■□□□□ 0.78
PAAF1Q9BRP4 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
PAAF1Q9BRP4 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
PAAF1Q9BRP4 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
PAAF1Q9BRP4 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
PAAF1Q9BRP4 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
PAAF1Q9BRP4 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
PAAF1Q9BRP4 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC19.93■□□□□ 0.78
PAAF1Q9BRP4 MIR3180-1-201ENST00000580374 94 ntBASIC19.93■□□□□ 0.78
PAAF1Q9BRP4 MIR3180-3-201ENST00000584616 94 ntBASIC19.93■□□□□ 0.78
PAAF1Q9BRP4 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
PAAF1Q9BRP4 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
PAAF1Q9BRP4 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
PAAF1Q9BRP4 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
PAAF1Q9BRP4 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
PAAF1Q9BRP4 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
PAAF1Q9BRP4 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC19.93■□□□□ 0.78
PAAF1Q9BRP4 AC099343.3-201ENST00000605834 2503 ntBASIC19.93■□□□□ 0.78
PAAF1Q9BRP4 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC19.93■□□□□ 0.78
PAAF1Q9BRP4 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
PAAF1Q9BRP4 CYP51A1P1-201ENST00000492267 1507 ntBASIC19.92■□□□□ 0.78
PAAF1Q9BRP4 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
PAAF1Q9BRP4 BX276092.5-203ENST00000456199 560 ntBASIC19.92■□□□□ 0.78
PAAF1Q9BRP4 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC19.92■□□□□ 0.78
PAAF1Q9BRP4 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC19.92■□□□□ 0.78
PAAF1Q9BRP4 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC19.92■□□□□ 0.78
PAAF1Q9BRP4 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
PAAF1Q9BRP4 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
PAAF1Q9BRP4 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC19.92■□□□□ 0.78
PAAF1Q9BRP4 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC19.92■□□□□ 0.78
PAAF1Q9BRP4 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC19.92■□□□□ 0.78
PAAF1Q9BRP4 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
PAAF1Q9BRP4 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
PAAF1Q9BRP4 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
PAAF1Q9BRP4 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
PAAF1Q9BRP4 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
PAAF1Q9BRP4 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
PAAF1Q9BRP4 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
PAAF1Q9BRP4 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
PAAF1Q9BRP4 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
PAAF1Q9BRP4 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
PAAF1Q9BRP4 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
PAAF1Q9BRP4 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
PAAF1Q9BRP4 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC19.91■□□□□ 0.78
PAAF1Q9BRP4 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
PAAF1Q9BRP4 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC19.91■□□□□ 0.78
PAAF1Q9BRP4 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 44.2 ms