Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC19.53■□□□□ 0.72
CDX2Q99626 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CDX2Q99626 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CDX2Q99626 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CDX2Q99626 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CDX2Q99626 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CDX2Q99626 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC19.53■□□□□ 0.72
CDX2Q99626 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC19.53■□□□□ 0.72
CDX2Q99626 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC19.53■□□□□ 0.72
CDX2Q99626 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CDX2Q99626 AC064836.3-201ENST00000607928 673 ntBASIC19.53■□□□□ 0.72
CDX2Q99626 AC233723.2-201ENST00000623798 2106 ntBASIC19.53■□□□□ 0.72
CDX2Q99626 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
CDX2Q99626 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC19.53■□□□□ 0.72
CDX2Q99626 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC19.53■□□□□ 0.72
CDX2Q99626 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CDX2Q99626 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC19.52■□□□□ 0.72
CDX2Q99626 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC19.52■□□□□ 0.72
CDX2Q99626 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
CDX2Q99626 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC19.52■□□□□ 0.72
CDX2Q99626 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CDX2Q99626 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CDX2Q99626 RCC2P3-201ENST00000418112 1537 ntBASIC19.52■□□□□ 0.72
CDX2Q99626 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CDX2Q99626 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC19.52■□□□□ 0.72
CDX2Q99626 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CDX2Q99626 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC19.52■□□□□ 0.72
CDX2Q99626 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CDX2Q99626 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
CDX2Q99626 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC19.52■□□□□ 0.72
CDX2Q99626 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
CDX2Q99626 RBSN-204ENST00000449050 903 ntTSL 2 BASIC19.52■□□□□ 0.72
CDX2Q99626 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC19.52■□□□□ 0.72
CDX2Q99626 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC19.52■□□□□ 0.72
CDX2Q99626 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC19.52■□□□□ 0.72
CDX2Q99626 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC19.52■□□□□ 0.72
CDX2Q99626 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CDX2Q99626 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.72
CDX2Q99626 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC19.52■□□□□ 0.72
CDX2Q99626 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CDX2Q99626 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CDX2Q99626 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
CDX2Q99626 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC19.52■□□□□ 0.71
CDX2Q99626 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.71
CDX2Q99626 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
CDX2Q99626 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CDX2Q99626 AC112777.1-201ENST00000540175 1423 ntBASIC19.51■□□□□ 0.71
CDX2Q99626 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CDX2Q99626 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CDX2Q99626 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC19.51■□□□□ 0.71
CDX2Q99626 INTS4P1-201ENST00000438455 1935 ntBASIC19.51■□□□□ 0.71
CDX2Q99626 FBXW4P1-201ENST00000426721 2239 ntBASIC19.51■□□□□ 0.71
CDX2Q99626 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CDX2Q99626 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CDX2Q99626 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC19.51■□□□□ 0.71
CDX2Q99626 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC19.51■□□□□ 0.71
CDX2Q99626 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC19.51■□□□□ 0.71
CDX2Q99626 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC19.51■□□□□ 0.71
CDX2Q99626 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC19.51■□□□□ 0.71
CDX2Q99626 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC19.51■□□□□ 0.71
CDX2Q99626 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC19.51■□□□□ 0.71
CDX2Q99626 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
CDX2Q99626 AL035252.4-201ENST00000624174 288 ntBASIC19.51■□□□□ 0.71
CDX2Q99626 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC19.51■□□□□ 0.71
CDX2Q99626 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC19.51■□□□□ 0.71
CDX2Q99626 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CDX2Q99626 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC19.51■□□□□ 0.71
CDX2Q99626 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CDX2Q99626 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CDX2Q99626 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CDX2Q99626 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CDX2Q99626 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CDX2Q99626 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC19.51■□□□□ 0.71
CDX2Q99626 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
CDX2Q99626 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CDX2Q99626 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
CDX2Q99626 AL162377.1-201ENST00000618844 1793 ntBASIC19.5■□□□□ 0.71
CDX2Q99626 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC19.5■□□□□ 0.71
CDX2Q99626 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
CDX2Q99626 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CDX2Q99626 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
CDX2Q99626 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CDX2Q99626 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
CDX2Q99626 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
CDX2Q99626 KIRREL3-AS3-201ENST00000404882 831 ntBASIC19.5■□□□□ 0.71
CDX2Q99626 AC005034.1-201ENST00000426657 489 ntBASIC19.5■□□□□ 0.71
CDX2Q99626 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC19.5■□□□□ 0.71
CDX2Q99626 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC19.5■□□□□ 0.71
CDX2Q99626 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC19.5■□□□□ 0.71
CDX2Q99626 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC19.5■□□□□ 0.71
CDX2Q99626 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
CDX2Q99626 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
CDX2Q99626 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CDX2Q99626 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CDX2Q99626 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC19.49■□□□□ 0.71
CDX2Q99626 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CDX2Q99626 AC009237.14-201ENST00000609975 1594 ntBASIC19.49■□□□□ 0.71
CDX2Q99626 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
CDX2Q99626 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
CDX2Q99626 ZNF815P-204ENST00000434898 1737 ntBASIC19.49■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms