Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC14.48□□□□□ -0.09
CCDC140Q96MF4 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC14.48□□□□□ -0.09
CCDC140Q96MF4 BX088651.1-201ENST00000540551 451 ntBASIC14.48□□□□□ -0.09
CCDC140Q96MF4 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC140Q96MF4 NAPSB-206ENST00000562112 1266 ntBASIC14.48□□□□□ -0.09
CCDC140Q96MF4 MIR3180-5-201ENST00000583743 153 ntBASIC14.48□□□□□ -0.09
CCDC140Q96MF4 AC010947.1-201ENST00000623454 693 ntBASIC14.48□□□□□ -0.09
CCDC140Q96MF4 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC140Q96MF4 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC140Q96MF4 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC14.48□□□□□ -0.09
CCDC140Q96MF4 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC140Q96MF4 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC140Q96MF4 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC140Q96MF4 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC140Q96MF4 AC005082.1-201ENST00000413042 2259 ntBASIC14.48□□□□□ -0.09
CCDC140Q96MF4 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC140Q96MF4 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CCDC140Q96MF4 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC14.47□□□□□ -0.09
CCDC140Q96MF4 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CCDC140Q96MF4 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC14.47□□□□□ -0.09
CCDC140Q96MF4 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC14.47□□□□□ -0.09
CCDC140Q96MF4 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC14.47□□□□□ -0.09
CCDC140Q96MF4 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC14.47□□□□□ -0.09
CCDC140Q96MF4 AC126763.1-201ENST00000552015 2118 ntBASIC14.47□□□□□ -0.09
CCDC140Q96MF4 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CCDC140Q96MF4 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC14.47□□□□□ -0.09
CCDC140Q96MF4 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CCDC140Q96MF4 INGX-201ENST00000359239 846 ntBASIC14.47□□□□□ -0.09
CCDC140Q96MF4 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CCDC140Q96MF4 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC14.47□□□□□ -0.09
CCDC140Q96MF4 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
CCDC140Q96MF4 EGLN1P1-201ENST00000531623 762 ntBASIC14.47□□□□□ -0.09
CCDC140Q96MF4 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC14.47□□□□□ -0.09
CCDC140Q96MF4 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC14.47□□□□□ -0.09
CCDC140Q96MF4 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CCDC140Q96MF4 AC104581.1-202ENST00000635932 2618 ntBASIC14.47□□□□□ -0.09
CCDC140Q96MF4 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC14.47□□□□□ -0.09
CCDC140Q96MF4 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC14.47□□□□□ -0.09
CCDC140Q96MF4 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CCDC140Q96MF4 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
CCDC140Q96MF4 KRT8P45-201ENST00000414328 1447 ntBASIC14.47□□□□□ -0.09
CCDC140Q96MF4 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
CCDC140Q96MF4 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CCDC140Q96MF4 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CCDC140Q96MF4 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC14.47□□□□□ -0.09
CCDC140Q96MF4 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC14.47□□□□□ -0.09
CCDC140Q96MF4 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CCDC140Q96MF4 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CCDC140Q96MF4 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC14.46□□□□□ -0.09
CCDC140Q96MF4 AC009113.1-201ENST00000570267 2443 ntBASIC14.46□□□□□ -0.09
CCDC140Q96MF4 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
CCDC140Q96MF4 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
CCDC140Q96MF4 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.09
CCDC140Q96MF4 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.09
CCDC140Q96MF4 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.09
CCDC140Q96MF4 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC14.46□□□□□ -0.09
CCDC140Q96MF4 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
CCDC140Q96MF4 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
CCDC140Q96MF4 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
CCDC140Q96MF4 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
CCDC140Q96MF4 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
CCDC140Q96MF4 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
CCDC140Q96MF4 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
CCDC140Q96MF4 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC14.46□□□□□ -0.09
CCDC140Q96MF4 ELP6-205ENST00000439305 880 ntTSL 2 BASIC14.46□□□□□ -0.09
CCDC140Q96MF4 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
CCDC140Q96MF4 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC14.46□□□□□ -0.09
CCDC140Q96MF4 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC14.46□□□□□ -0.09
CCDC140Q96MF4 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
CCDC140Q96MF4 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC14.46□□□□□ -0.09
CCDC140Q96MF4 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
CCDC140Q96MF4 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC14.46□□□□□ -0.09
CCDC140Q96MF4 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.09
CCDC140Q96MF4 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
CCDC140Q96MF4 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC14.46□□□□□ -0.09
CCDC140Q96MF4 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
CCDC140Q96MF4 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
CCDC140Q96MF4 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
CCDC140Q96MF4 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
CCDC140Q96MF4 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC14.46□□□□□ -0.1
CCDC140Q96MF4 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.1
CCDC140Q96MF4 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC14.46□□□□□ -0.1
CCDC140Q96MF4 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC14.46□□□□□ -0.1
CCDC140Q96MF4 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
CCDC140Q96MF4 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
CCDC140Q96MF4 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC14.45□□□□□ -0.1
CCDC140Q96MF4 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC140Q96MF4 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC140Q96MF4 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC140Q96MF4 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC140Q96MF4 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC140Q96MF4 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC140Q96MF4 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC140Q96MF4 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC140Q96MF4 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC140Q96MF4 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC140Q96MF4 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CCDC140Q96MF4 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC14.45□□□□□ -0.1
CCDC140Q96MF4 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
CCDC140Q96MF4 MIR564-202ENST00000385049 94 ntBASIC14.45□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms