Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.92
CCDC65Q8IXS2 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC65Q8IXS2 AL596275.1-201ENST00000423464 877 ntBASIC20.77■□□□□ 0.92
CCDC65Q8IXS2 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC20.77■□□□□ 0.92
CCDC65Q8IXS2 CCR12P-201ENST00000446203 998 ntBASIC20.77■□□□□ 0.92
CCDC65Q8IXS2 TSPY17P-201ENST00000450329 467 ntBASIC20.77■□□□□ 0.92
CCDC65Q8IXS2 TSPY15P-201ENST00000457163 923 ntBASIC20.77■□□□□ 0.92
CCDC65Q8IXS2 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC20.77■□□□□ 0.92
CCDC65Q8IXS2 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
CCDC65Q8IXS2 C2orf69P3-201ENST00000565542 1120 ntBASIC20.77■□□□□ 0.92
CCDC65Q8IXS2 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC65Q8IXS2 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC65Q8IXS2 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC20.77■□□□□ 0.92
CCDC65Q8IXS2 GLDC-219ENST00000640208 420 ntTSL 2 BASIC20.77■□□□□ 0.92
CCDC65Q8IXS2 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC65Q8IXS2 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC65Q8IXS2 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC20.77■□□□□ 0.91
CCDC65Q8IXS2 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
CCDC65Q8IXS2 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC65Q8IXS2 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC20.76■□□□□ 0.91
CCDC65Q8IXS2 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC65Q8IXS2 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC20.76■□□□□ 0.91
CCDC65Q8IXS2 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC20.76■□□□□ 0.91
CCDC65Q8IXS2 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC65Q8IXS2 AL353719.1-201ENST00000566847 864 ntBASIC20.76■□□□□ 0.91
CCDC65Q8IXS2 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC65Q8IXS2 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC20.76■□□□□ 0.91
CCDC65Q8IXS2 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
CCDC65Q8IXS2 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC65Q8IXS2 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC65Q8IXS2 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC20.76■□□□□ 0.91
CCDC65Q8IXS2 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
CCDC65Q8IXS2 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC65Q8IXS2 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
CCDC65Q8IXS2 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC65Q8IXS2 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
CCDC65Q8IXS2 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC65Q8IXS2 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC65Q8IXS2 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC65Q8IXS2 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC20.75■□□□□ 0.91
CCDC65Q8IXS2 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC20.75■□□□□ 0.91
CCDC65Q8IXS2 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
CCDC65Q8IXS2 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC65Q8IXS2 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC20.75■□□□□ 0.91
CCDC65Q8IXS2 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC20.75■□□□□ 0.91
CCDC65Q8IXS2 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC20.75■□□□□ 0.91
CCDC65Q8IXS2 MYC-208ENST00000641036 567 ntBASIC20.75■□□□□ 0.91
CCDC65Q8IXS2 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
CCDC65Q8IXS2 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC20.75■□□□□ 0.91
CCDC65Q8IXS2 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC65Q8IXS2 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC65Q8IXS2 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC65Q8IXS2 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC65Q8IXS2 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC65Q8IXS2 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC65Q8IXS2 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC65Q8IXS2 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC65Q8IXS2 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC65Q8IXS2 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC20.75■□□□□ 0.91
CCDC65Q8IXS2 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CCDC65Q8IXS2 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC20.74■□□□□ 0.91
CCDC65Q8IXS2 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC20.74■□□□□ 0.91
CCDC65Q8IXS2 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC65Q8IXS2 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
CCDC65Q8IXS2 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC65Q8IXS2 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC20.74■□□□□ 0.91
CCDC65Q8IXS2 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC65Q8IXS2 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC20.74■□□□□ 0.91
CCDC65Q8IXS2 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
CCDC65Q8IXS2 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC65Q8IXS2 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC20.74■□□□□ 0.91
CCDC65Q8IXS2 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC65Q8IXS2 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC20.74■□□□□ 0.91
CCDC65Q8IXS2 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC20.74■□□□□ 0.91
CCDC65Q8IXS2 AC116562.4-202ENST00000641738 218 ntBASIC20.74■□□□□ 0.91
CCDC65Q8IXS2 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC65Q8IXS2 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC65Q8IXS2 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC65Q8IXS2 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC65Q8IXS2 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC20.74■□□□□ 0.91
CCDC65Q8IXS2 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC65Q8IXS2 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC65Q8IXS2 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CCDC65Q8IXS2 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC20.73■□□□□ 0.91
CCDC65Q8IXS2 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC65Q8IXS2 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC20.73■□□□□ 0.91
CCDC65Q8IXS2 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC20.73■□□□□ 0.91
CCDC65Q8IXS2 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC20.73■□□□□ 0.91
CCDC65Q8IXS2 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC20.73■□□□□ 0.91
CCDC65Q8IXS2 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC65Q8IXS2 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC65Q8IXS2 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC65Q8IXS2 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
CCDC65Q8IXS2 AC112777.1-201ENST00000540175 1423 ntBASIC20.73■□□□□ 0.91
CCDC65Q8IXS2 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC65Q8IXS2 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC20.73■□□□□ 0.91
CCDC65Q8IXS2 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC65Q8IXS2 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC65Q8IXS2 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CCDC65Q8IXS2 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms