Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC28AQ8IWP9 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC15.66■□□□□ 0.1
CCDC28AQ8IWP9 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC15.66■□□□□ 0.1
CCDC28AQ8IWP9 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC15.66■□□□□ 0.1
CCDC28AQ8IWP9 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC15.66■□□□□ 0.1
CCDC28AQ8IWP9 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC28AQ8IWP9 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC15.66■□□□□ 0.1
CCDC28AQ8IWP9 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC28AQ8IWP9 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC15.66■□□□□ 0.1
CCDC28AQ8IWP9 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
CCDC28AQ8IWP9 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CCDC28AQ8IWP9 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC15.66■□□□□ 0.1
CCDC28AQ8IWP9 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC28AQ8IWP9 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC28AQ8IWP9 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC15.65■□□□□ 0.1
CCDC28AQ8IWP9 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC28AQ8IWP9 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC28AQ8IWP9 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC15.65■□□□□ 0.1
CCDC28AQ8IWP9 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC15.65■□□□□ 0.1
CCDC28AQ8IWP9 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC28AQ8IWP9 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC15.65■□□□□ 0.1
CCDC28AQ8IWP9 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC28AQ8IWP9 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC28AQ8IWP9 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC15.65■□□□□ 0.1
CCDC28AQ8IWP9 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC28AQ8IWP9 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC28AQ8IWP9 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
CCDC28AQ8IWP9 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC28AQ8IWP9 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC15.65■□□□□ 0.1
CCDC28AQ8IWP9 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC28AQ8IWP9 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC28AQ8IWP9 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC28AQ8IWP9 NALT1-201ENST00000429224 738 ntTSL 5 BASIC15.65■□□□□ 0.1
CCDC28AQ8IWP9 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC15.65■□□□□ 0.1
CCDC28AQ8IWP9 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC28AQ8IWP9 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC15.65■□□□□ 0.1
CCDC28AQ8IWP9 AICDA-202ENST00000537228 667 ntTSL 5 BASIC15.65■□□□□ 0.1
CCDC28AQ8IWP9 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC15.65■□□□□ 0.1
CCDC28AQ8IWP9 AC008764.7-201ENST00000593779 1081 ntBASIC15.65■□□□□ 0.1
CCDC28AQ8IWP9 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC28AQ8IWP9 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC28AQ8IWP9 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
CCDC28AQ8IWP9 PCDHB17P-201ENST00000539533 2393 ntBASIC15.65■□□□□ 0.1
CCDC28AQ8IWP9 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC28AQ8IWP9 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC28AQ8IWP9 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
CCDC28AQ8IWP9 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
CCDC28AQ8IWP9 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC28AQ8IWP9 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC15.65■□□□□ 0.1
CCDC28AQ8IWP9 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC28AQ8IWP9 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC28AQ8IWP9 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
CCDC28AQ8IWP9 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC28AQ8IWP9 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC28AQ8IWP9 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
CCDC28AQ8IWP9 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.1
CCDC28AQ8IWP9 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.1
CCDC28AQ8IWP9 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC15.64■□□□□ 0.1
CCDC28AQ8IWP9 AGK-211ENST00000629555 2765 ntTSL 5 BASIC15.64■□□□□ 0.09
CCDC28AQ8IWP9 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
CCDC28AQ8IWP9 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
CCDC28AQ8IWP9 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CCDC28AQ8IWP9 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
CCDC28AQ8IWP9 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CCDC28AQ8IWP9 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CCDC28AQ8IWP9 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
CCDC28AQ8IWP9 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC15.64■□□□□ 0.09
CCDC28AQ8IWP9 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
CCDC28AQ8IWP9 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
CCDC28AQ8IWP9 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CCDC28AQ8IWP9 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CCDC28AQ8IWP9 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
CCDC28AQ8IWP9 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC15.64■□□□□ 0.09
CCDC28AQ8IWP9 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CCDC28AQ8IWP9 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
CCDC28AQ8IWP9 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC15.64■□□□□ 0.09
CCDC28AQ8IWP9 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC15.64■□□□□ 0.09
CCDC28AQ8IWP9 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC15.64■□□□□ 0.09
CCDC28AQ8IWP9 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
CCDC28AQ8IWP9 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC15.64■□□□□ 0.09
CCDC28AQ8IWP9 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC15.64■□□□□ 0.09
CCDC28AQ8IWP9 AC027682.1-201ENST00000562846 899 ntBASIC15.64■□□□□ 0.09
CCDC28AQ8IWP9 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC15.64■□□□□ 0.09
CCDC28AQ8IWP9 AC106739.1-201ENST00000617035 715 ntBASIC15.64■□□□□ 0.09
CCDC28AQ8IWP9 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
CCDC28AQ8IWP9 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
CCDC28AQ8IWP9 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC15.64■□□□□ 0.09
CCDC28AQ8IWP9 BID-213ENST00000615414 2236 ntTSL 5 BASIC15.64■□□□□ 0.09
CCDC28AQ8IWP9 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
CCDC28AQ8IWP9 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CCDC28AQ8IWP9 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CCDC28AQ8IWP9 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
CCDC28AQ8IWP9 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC15.64■□□□□ 0.09
CCDC28AQ8IWP9 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CCDC28AQ8IWP9 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
CCDC28AQ8IWP9 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
CCDC28AQ8IWP9 ME2-201ENST00000321341 9415 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
CCDC28AQ8IWP9 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
CCDC28AQ8IWP9 NFIC-211ENST00000641145 8399 ntBASIC15.63■□□□□ 0.09
CCDC28AQ8IWP9 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 101.1 ms