Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC19.89■□□□□ 0.77
USP41Q3LFD5 ELP6-205ENST00000439305 880 ntTSL 2 BASIC19.89■□□□□ 0.77
USP41Q3LFD5 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC19.89■□□□□ 0.77
USP41Q3LFD5 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC19.89■□□□□ 0.77
USP41Q3LFD5 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC19.89■□□□□ 0.77
USP41Q3LFD5 KRT8P26-201ENST00000534154 1276 ntBASIC19.89■□□□□ 0.77
USP41Q3LFD5 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC19.89■□□□□ 0.77
USP41Q3LFD5 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC19.89■□□□□ 0.77
USP41Q3LFD5 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC19.89■□□□□ 0.77
USP41Q3LFD5 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
USP41Q3LFD5 AC012313.10-201ENST00000623509 926 ntBASIC19.89■□□□□ 0.77
USP41Q3LFD5 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.77
USP41Q3LFD5 WDR6-223ENST00000627177 207 ntTSL 2 BASIC19.89■□□□□ 0.77
USP41Q3LFD5 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
USP41Q3LFD5 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC19.88■□□□□ 0.77
USP41Q3LFD5 FP475955.4-201ENST00000623131 1990 ntBASIC19.88■□□□□ 0.77
USP41Q3LFD5 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC19.88■□□□□ 0.77
USP41Q3LFD5 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC19.88■□□□□ 0.77
USP41Q3LFD5 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
USP41Q3LFD5 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
USP41Q3LFD5 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
USP41Q3LFD5 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC19.88■□□□□ 0.77
USP41Q3LFD5 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
USP41Q3LFD5 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
USP41Q3LFD5 TPM4P1-201ENST00000436100 807 ntBASIC19.88■□□□□ 0.77
USP41Q3LFD5 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC19.88■□□□□ 0.77
USP41Q3LFD5 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
USP41Q3LFD5 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC19.88■□□□□ 0.77
USP41Q3LFD5 MIR3652-201ENST00000579335 131 ntBASIC19.88■□□□□ 0.77
USP41Q3LFD5 AL691432.3-201ENST00000621860 400 ntBASIC19.88■□□□□ 0.77
USP41Q3LFD5 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
USP41Q3LFD5 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC19.88■□□□□ 0.77
USP41Q3LFD5 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
USP41Q3LFD5 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
USP41Q3LFD5 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
USP41Q3LFD5 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC19.88■□□□□ 0.77
USP41Q3LFD5 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
USP41Q3LFD5 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
USP41Q3LFD5 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC19.87■□□□□ 0.77
USP41Q3LFD5 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC19.87■□□□□ 0.77
USP41Q3LFD5 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
USP41Q3LFD5 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
USP41Q3LFD5 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
USP41Q3LFD5 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC19.87■□□□□ 0.77
USP41Q3LFD5 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC19.87■□□□□ 0.77
USP41Q3LFD5 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC19.87■□□□□ 0.77
USP41Q3LFD5 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC19.87■□□□□ 0.77
USP41Q3LFD5 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC19.87■□□□□ 0.77
USP41Q3LFD5 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
USP41Q3LFD5 AC141586.3-201ENST00000562166 1838 ntBASIC19.87■□□□□ 0.77
USP41Q3LFD5 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
USP41Q3LFD5 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
USP41Q3LFD5 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
USP41Q3LFD5 AC034236.2-201ENST00000606662 1610 ntBASIC19.87■□□□□ 0.77
USP41Q3LFD5 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
USP41Q3LFD5 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC19.87■□□□□ 0.77
USP41Q3LFD5 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
USP41Q3LFD5 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
USP41Q3LFD5 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC19.86■□□□□ 0.77
USP41Q3LFD5 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
USP41Q3LFD5 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
USP41Q3LFD5 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
USP41Q3LFD5 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
USP41Q3LFD5 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
USP41Q3LFD5 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
USP41Q3LFD5 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC19.86■□□□□ 0.77
USP41Q3LFD5 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
USP41Q3LFD5 MIR3180-1-201ENST00000580374 94 ntBASIC19.86■□□□□ 0.77
USP41Q3LFD5 PRR29-207ENST00000580752 458 ntTSL 3 BASIC19.86■□□□□ 0.77
USP41Q3LFD5 MIR3180-3-201ENST00000584616 94 ntBASIC19.86■□□□□ 0.77
USP41Q3LFD5 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
USP41Q3LFD5 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC19.86■□□□□ 0.77
USP41Q3LFD5 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
USP41Q3LFD5 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
USP41Q3LFD5 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
USP41Q3LFD5 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
USP41Q3LFD5 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
USP41Q3LFD5 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
USP41Q3LFD5 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
USP41Q3LFD5 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC19.86■□□□□ 0.77
USP41Q3LFD5 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC19.86■□□□□ 0.77
USP41Q3LFD5 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
USP41Q3LFD5 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
USP41Q3LFD5 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
USP41Q3LFD5 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
USP41Q3LFD5 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
USP41Q3LFD5 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
USP41Q3LFD5 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
USP41Q3LFD5 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
USP41Q3LFD5 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC19.85■□□□□ 0.77
USP41Q3LFD5 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
USP41Q3LFD5 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC19.85■□□□□ 0.77
USP41Q3LFD5 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
USP41Q3LFD5 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
USP41Q3LFD5 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
USP41Q3LFD5 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
USP41Q3LFD5 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
USP41Q3LFD5 TSPY22P-201ENST00000427496 604 ntBASIC19.85■□□□□ 0.77
USP41Q3LFD5 CHCHD2P8-201ENST00000429873 447 ntBASIC19.85■□□□□ 0.77
USP41Q3LFD5 AP002383.4-201ENST00000442518 975 ntBASIC19.85■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 19.7 ms