Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
SOX3P41225 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC17.61■□□□□ 0.41
SOX3P41225 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC17.61■□□□□ 0.41
SOX3P41225 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
SOX3P41225 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC17.61■□□□□ 0.41
SOX3P41225 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC17.6■□□□□ 0.41
SOX3P41225 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
SOX3P41225 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC17.6■□□□□ 0.41
SOX3P41225 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SOX3P41225 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
SOX3P41225 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SOX3P41225 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
SOX3P41225 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
SOX3P41225 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SOX3P41225 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
SOX3P41225 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
SOX3P41225 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC17.6■□□□□ 0.41
SOX3P41225 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SOX3P41225 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
SOX3P41225 ECEL1P2-202ENST00000465689 757 ntBASIC17.6■□□□□ 0.41
SOX3P41225 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC17.6■□□□□ 0.41
SOX3P41225 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
SOX3P41225 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC17.6■□□□□ 0.41
SOX3P41225 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SOX3P41225 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
SOX3P41225 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SOX3P41225 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SOX3P41225 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC17.6■□□□□ 0.41
SOX3P41225 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SOX3P41225 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC17.6■□□□□ 0.41
SOX3P41225 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
SOX3P41225 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
SOX3P41225 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
SOX3P41225 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
SOX3P41225 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC17.6■□□□□ 0.41
SOX3P41225 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC17.6■□□□□ 0.41
SOX3P41225 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SOX3P41225 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SOX3P41225 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
SOX3P41225 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
SOX3P41225 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
SOX3P41225 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
SOX3P41225 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
SOX3P41225 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC17.6■□□□□ 0.41
SOX3P41225 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC17.6■□□□□ 0.41
SOX3P41225 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
SOX3P41225 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SOX3P41225 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SOX3P41225 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC17.59■□□□□ 0.41
SOX3P41225 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
SOX3P41225 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC17.59■□□□□ 0.41
SOX3P41225 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
SOX3P41225 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
SOX3P41225 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC17.59■□□□□ 0.41
SOX3P41225 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC17.59■□□□□ 0.41
SOX3P41225 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SOX3P41225 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
SOX3P41225 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SOX3P41225 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SOX3P41225 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SOX3P41225 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
SOX3P41225 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SOX3P41225 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC17.59■□□□□ 0.41
SOX3P41225 INGX-201ENST00000359239 846 ntBASIC17.59■□□□□ 0.41
SOX3P41225 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC17.59■□□□□ 0.41
SOX3P41225 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
SOX3P41225 FAM210CP-201ENST00000445714 574 ntBASIC17.59■□□□□ 0.41
SOX3P41225 AC128688.1-201ENST00000487626 519 ntBASIC17.59■□□□□ 0.41
SOX3P41225 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC17.59■□□□□ 0.41
SOX3P41225 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC17.59■□□□□ 0.41
SOX3P41225 CLN6-221ENST00000637494 765 ntTSL 5 BASIC17.59■□□□□ 0.41
SOX3P41225 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC17.59■□□□□ 0.41
SOX3P41225 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
SOX3P41225 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SOX3P41225 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
SOX3P41225 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC17.58■□□□□ 0.41
SOX3P41225 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC17.58■□□□□ 0.41
SOX3P41225 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC17.58■□□□□ 0.41
SOX3P41225 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC17.58■□□□□ 0.41
SOX3P41225 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.41
SOX3P41225 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.41
SOX3P41225 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
SOX3P41225 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC17.58■□□□□ 0.41
SOX3P41225 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC17.58■□□□□ 0.41
SOX3P41225 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
SOX3P41225 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
SOX3P41225 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SOX3P41225 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SOX3P41225 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
SOX3P41225 RCN1P1-201ENST00000400413 996 ntBASIC17.58■□□□□ 0.4
SOX3P41225 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
SOX3P41225 TSPY23P-201ENST00000440136 739 ntBASIC17.58■□□□□ 0.4
SOX3P41225 SLC25A3P1-201ENST00000443844 931 ntBASIC17.58■□□□□ 0.4
SOX3P41225 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC17.58■□□□□ 0.4
SOX3P41225 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC17.58■□□□□ 0.4
SOX3P41225 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC17.58■□□□□ 0.4
SOX3P41225 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC17.58■□□□□ 0.4
SOX3P41225 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC17.58■□□□□ 0.4
SOX3P41225 AC116562.4-202ENST00000641738 218 ntBASIC17.58■□□□□ 0.4
SOX3P41225 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC17.58■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms