Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
HLA-DMBP28068 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
HLA-DMBP28068 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
HLA-DMBP28068 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
HLA-DMBP28068 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC14.28□□□□□ -0.12
HLA-DMBP28068 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
HLA-DMBP28068 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC14.28□□□□□ -0.12
HLA-DMBP28068 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
HLA-DMBP28068 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC14.28□□□□□ -0.12
HLA-DMBP28068 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
HLA-DMBP28068 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC14.28□□□□□ -0.12
HLA-DMBP28068 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC14.28□□□□□ -0.12
HLA-DMBP28068 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
HLA-DMBP28068 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC14.28□□□□□ -0.12
HLA-DMBP28068 LY6E-205ENST00000519611 635 ntTSL 3 BASIC14.28□□□□□ -0.12
HLA-DMBP28068 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC14.28□□□□□ -0.12
HLA-DMBP28068 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC14.28□□□□□ -0.12
HLA-DMBP28068 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC14.28□□□□□ -0.12
HLA-DMBP28068 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
HLA-DMBP28068 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC14.28□□□□□ -0.12
HLA-DMBP28068 EFTUD1P1-204ENST00000560401 1798 ntBASIC14.28□□□□□ -0.12
HLA-DMBP28068 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC14.28□□□□□ -0.12
HLA-DMBP28068 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
HLA-DMBP28068 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
HLA-DMBP28068 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
HLA-DMBP28068 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC14.28□□□□□ -0.12
HLA-DMBP28068 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
HLA-DMBP28068 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC14.28□□□□□ -0.12
HLA-DMBP28068 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
HLA-DMBP28068 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC14.28□□□□□ -0.12
HLA-DMBP28068 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
HLA-DMBP28068 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC14.28□□□□□ -0.12
HLA-DMBP28068 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
HLA-DMBP28068 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
HLA-DMBP28068 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
HLA-DMBP28068 BICD1-207ENST00000551848 1962 ntBASIC14.27□□□□□ -0.12
HLA-DMBP28068 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC14.27□□□□□ -0.12
HLA-DMBP28068 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
HLA-DMBP28068 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC14.27□□□□□ -0.12
HLA-DMBP28068 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.12
HLA-DMBP28068 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
HLA-DMBP28068 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC14.27□□□□□ -0.12
HLA-DMBP28068 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
HLA-DMBP28068 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC14.27□□□□□ -0.12
HLA-DMBP28068 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC14.27□□□□□ -0.13
HLA-DMBP28068 ISG20-202ENST00000379224 540 ntTSL 3 BASIC14.27□□□□□ -0.13
HLA-DMBP28068 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC14.27□□□□□ -0.13
HLA-DMBP28068 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC14.27□□□□□ -0.13
HLA-DMBP28068 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC14.27□□□□□ -0.13
HLA-DMBP28068 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC14.27□□□□□ -0.13
HLA-DMBP28068 AC008550.1-201ENST00000511500 884 ntBASIC14.27□□□□□ -0.13
HLA-DMBP28068 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
HLA-DMBP28068 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC14.27□□□□□ -0.13
HLA-DMBP28068 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC14.27□□□□□ -0.13
HLA-DMBP28068 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.13
HLA-DMBP28068 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC14.27□□□□□ -0.13
HLA-DMBP28068 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
HLA-DMBP28068 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
HLA-DMBP28068 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
HLA-DMBP28068 AL499627.1-201ENST00000569373 2188 ntBASIC14.27□□□□□ -0.13
HLA-DMBP28068 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
HLA-DMBP28068 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
HLA-DMBP28068 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
HLA-DMBP28068 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC14.27□□□□□ -0.13
HLA-DMBP28068 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC14.27□□□□□ -0.13
HLA-DMBP28068 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC14.27□□□□□ -0.13
HLA-DMBP28068 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC14.27□□□□□ -0.13
HLA-DMBP28068 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC14.27□□□□□ -0.13
HLA-DMBP28068 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
HLA-DMBP28068 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC14.26□□□□□ -0.13
HLA-DMBP28068 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
HLA-DMBP28068 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
HLA-DMBP28068 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
HLA-DMBP28068 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
HLA-DMBP28068 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC14.26□□□□□ -0.13
HLA-DMBP28068 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
HLA-DMBP28068 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC14.26□□□□□ -0.13
HLA-DMBP28068 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
HLA-DMBP28068 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
HLA-DMBP28068 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
HLA-DMBP28068 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
HLA-DMBP28068 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
HLA-DMBP28068 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
HLA-DMBP28068 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
HLA-DMBP28068 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
HLA-DMBP28068 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
HLA-DMBP28068 SERF2-207ENST00000409614 582 ntTSL 2 BASIC14.26□□□□□ -0.13
HLA-DMBP28068 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC14.26□□□□□ -0.13
HLA-DMBP28068 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC14.26□□□□□ -0.13
HLA-DMBP28068 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
HLA-DMBP28068 Z85996.1-201ENST00000494644 937 ntBASIC14.26□□□□□ -0.13
HLA-DMBP28068 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
HLA-DMBP28068 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC14.26□□□□□ -0.13
HLA-DMBP28068 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC14.26□□□□□ -0.13
HLA-DMBP28068 AL354751.1-201ENST00000412768 1863 ntBASIC14.26□□□□□ -0.13
HLA-DMBP28068 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
HLA-DMBP28068 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC14.26□□□□□ -0.13
HLA-DMBP28068 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
HLA-DMBP28068 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC14.26□□□□□ -0.13
HLA-DMBP28068 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms