Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
HMGA1P17096 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
HMGA1P17096 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC19.41■□□□□ 0.7
HMGA1P17096 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC19.41■□□□□ 0.7
HMGA1P17096 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
HMGA1P17096 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
HMGA1P17096 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
HMGA1P17096 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC19.41■□□□□ 0.7
HMGA1P17096 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC19.41■□□□□ 0.7
HMGA1P17096 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
HMGA1P17096 PBK-203ENST00000522944 1499 ntTSL 2 BASIC19.41■□□□□ 0.7
HMGA1P17096 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC19.41■□□□□ 0.7
HMGA1P17096 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
HMGA1P17096 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
HMGA1P17096 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
HMGA1P17096 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
HMGA1P17096 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
HMGA1P17096 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
HMGA1P17096 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
HMGA1P17096 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
HMGA1P17096 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC19.4■□□□□ 0.7
HMGA1P17096 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
HMGA1P17096 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC19.4■□□□□ 0.7
HMGA1P17096 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC19.4■□□□□ 0.7
HMGA1P17096 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
HMGA1P17096 KRT18P41-201ENST00000518924 1277 ntBASIC19.4■□□□□ 0.7
HMGA1P17096 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
HMGA1P17096 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC19.4■□□□□ 0.7
HMGA1P17096 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
HMGA1P17096 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
HMGA1P17096 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC19.4■□□□□ 0.7
HMGA1P17096 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
HMGA1P17096 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC19.4■□□□□ 0.7
HMGA1P17096 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC19.4■□□□□ 0.7
HMGA1P17096 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
HMGA1P17096 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC19.4■□□□□ 0.7
HMGA1P17096 AC116562.4-201ENST00000641316 2276 ntBASIC19.4■□□□□ 0.7
HMGA1P17096 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
HMGA1P17096 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
HMGA1P17096 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC19.39■□□□□ 0.7
HMGA1P17096 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.7
HMGA1P17096 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
HMGA1P17096 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.7
HMGA1P17096 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
HMGA1P17096 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
HMGA1P17096 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC19.39■□□□□ 0.69
HMGA1P17096 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
HMGA1P17096 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
HMGA1P17096 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
HMGA1P17096 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC19.39■□□□□ 0.69
HMGA1P17096 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC19.39■□□□□ 0.69
HMGA1P17096 TSPY22P-201ENST00000427496 604 ntBASIC19.39■□□□□ 0.69
HMGA1P17096 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC19.39■□□□□ 0.69
HMGA1P17096 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
HMGA1P17096 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC19.39■□□□□ 0.69
HMGA1P17096 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC19.39■□□□□ 0.69
HMGA1P17096 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC19.39■□□□□ 0.69
HMGA1P17096 AC083906.6-201ENST00000641366 219 ntBASIC19.39■□□□□ 0.69
HMGA1P17096 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
HMGA1P17096 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
HMGA1P17096 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC19.39■□□□□ 0.69
HMGA1P17096 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
HMGA1P17096 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC19.39■□□□□ 0.69
HMGA1P17096 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
HMGA1P17096 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
HMGA1P17096 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
HMGA1P17096 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
HMGA1P17096 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
HMGA1P17096 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
HMGA1P17096 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
HMGA1P17096 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
HMGA1P17096 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
HMGA1P17096 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
HMGA1P17096 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
HMGA1P17096 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC19.38■□□□□ 0.69
HMGA1P17096 PTGES2-AS1-201ENST00000443493 2100 ntBASIC19.38■□□□□ 0.69
HMGA1P17096 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC19.38■□□□□ 0.69
HMGA1P17096 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC19.38■□□□□ 0.69
HMGA1P17096 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
HMGA1P17096 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC19.38■□□□□ 0.69
HMGA1P17096 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
HMGA1P17096 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC19.38■□□□□ 0.69
HMGA1P17096 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC19.38■□□□□ 0.69
HMGA1P17096 AC012313.10-201ENST00000623509 926 ntBASIC19.38■□□□□ 0.69
HMGA1P17096 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC19.38■□□□□ 0.69
HMGA1P17096 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
HMGA1P17096 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
HMGA1P17096 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC19.37■□□□□ 0.69
HMGA1P17096 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC19.37■□□□□ 0.69
HMGA1P17096 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
HMGA1P17096 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
HMGA1P17096 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
HMGA1P17096 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
HMGA1P17096 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
HMGA1P17096 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
HMGA1P17096 AC092329.2-201ENST00000598402 547 ntBASIC19.37■□□□□ 0.69
HMGA1P17096 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
HMGA1P17096 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
HMGA1P17096 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC19.37■□□□□ 0.69
HMGA1P17096 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms