Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 C2orf69P3-201ENST00000565542 1120 ntBASIC22.08■■□□□ 1.13
HMGB1P09429 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
HMGB1P09429 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.12
HMGB1P09429 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC22.08■■□□□ 1.12
HMGB1P09429 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.12
HMGB1P09429 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC22.08■■□□□ 1.12
HMGB1P09429 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC22.08■■□□□ 1.12
HMGB1P09429 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.12
HMGB1P09429 AL499627.1-201ENST00000569373 2188 ntBASIC22.08■■□□□ 1.12
HMGB1P09429 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC22.08■■□□□ 1.12
HMGB1P09429 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.12
HMGB1P09429 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.12
HMGB1P09429 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.12
HMGB1P09429 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC22.07■■□□□ 1.12
HMGB1P09429 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
HMGB1P09429 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC22.07■■□□□ 1.12
HMGB1P09429 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC22.07■■□□□ 1.12
HMGB1P09429 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC22.07■■□□□ 1.12
HMGB1P09429 AC092338.2-201ENST00000568827 1415 ntBASIC22.07■■□□□ 1.12
HMGB1P09429 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
HMGB1P09429 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC22.07■■□□□ 1.12
HMGB1P09429 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
HMGB1P09429 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC22.07■■□□□ 1.12
HMGB1P09429 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC22.07■■□□□ 1.12
HMGB1P09429 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC22.07■■□□□ 1.12
HMGB1P09429 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC22.07■■□□□ 1.12
HMGB1P09429 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC22.07■■□□□ 1.12
HMGB1P09429 HIST1H2APS4-201ENST00000362070 348 ntBASIC22.07■■□□□ 1.12
HMGB1P09429 AL390955.1-201ENST00000428694 934 ntBASIC22.07■■□□□ 1.12
HMGB1P09429 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC22.07■■□□□ 1.12
HMGB1P09429 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC22.07■■□□□ 1.12
HMGB1P09429 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
HMGB1P09429 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC22.07■■□□□ 1.12
HMGB1P09429 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC22.07■■□□□ 1.12
HMGB1P09429 MIR3180-5-201ENST00000583743 153 ntBASIC22.07■■□□□ 1.12
HMGB1P09429 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC22.07■■□□□ 1.12
HMGB1P09429 AC116562.4-202ENST00000641738 218 ntBASIC22.07■■□□□ 1.12
HMGB1P09429 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC22.07■■□□□ 1.12
HMGB1P09429 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
HMGB1P09429 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
HMGB1P09429 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC22.07■■□□□ 1.12
HMGB1P09429 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
HMGB1P09429 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
HMGB1P09429 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC22.07■■□□□ 1.12
HMGB1P09429 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC22.07■■□□□ 1.12
HMGB1P09429 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC22.07■■□□□ 1.12
HMGB1P09429 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC22.07■■□□□ 1.12
HMGB1P09429 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
HMGB1P09429 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
HMGB1P09429 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC22.07■■□□□ 1.12
HMGB1P09429 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
HMGB1P09429 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC22.07■■□□□ 1.12
HMGB1P09429 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC22.07■■□□□ 1.12
HMGB1P09429 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC22.06■■□□□ 1.12
HMGB1P09429 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
HMGB1P09429 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC22.06■■□□□ 1.12
HMGB1P09429 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC22.06■■□□□ 1.12
HMGB1P09429 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC22.06■■□□□ 1.12
HMGB1P09429 AC126763.1-201ENST00000552015 2118 ntBASIC22.06■■□□□ 1.12
HMGB1P09429 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC22.06■■□□□ 1.12
HMGB1P09429 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC22.06■■□□□ 1.12
HMGB1P09429 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC22.06■■□□□ 1.12
HMGB1P09429 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC22.06■■□□□ 1.12
HMGB1P09429 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
HMGB1P09429 AP003041.3-201ENST00000527151 707 ntBASIC22.06■■□□□ 1.12
HMGB1P09429 BX088651.1-201ENST00000540551 451 ntBASIC22.06■■□□□ 1.12
HMGB1P09429 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
HMGB1P09429 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC22.06■■□□□ 1.12
HMGB1P09429 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
HMGB1P09429 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC22.06■■□□□ 1.12
HMGB1P09429 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
HMGB1P09429 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC22.06■■□□□ 1.12
HMGB1P09429 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC22.06■■□□□ 1.12
HMGB1P09429 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC22.06■■□□□ 1.12
HMGB1P09429 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
HMGB1P09429 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
HMGB1P09429 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC22.06■■□□□ 1.12
HMGB1P09429 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
HMGB1P09429 AC034236.2-201ENST00000606662 1610 ntBASIC22.06■■□□□ 1.12
HMGB1P09429 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC22.06■■□□□ 1.12
HMGB1P09429 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC22.06■■□□□ 1.12
HMGB1P09429 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
HMGB1P09429 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC22.05■■□□□ 1.12
HMGB1P09429 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
HMGB1P09429 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
HMGB1P09429 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC22.05■■□□□ 1.12
HMGB1P09429 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC22.05■■□□□ 1.12
HMGB1P09429 TSPY14P-201ENST00000303979 915 ntBASIC22.05■■□□□ 1.12
HMGB1P09429 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
HMGB1P09429 AP000593.1-201ENST00000393668 712 ntBASIC22.05■■□□□ 1.12
HMGB1P09429 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC22.05■■□□□ 1.12
HMGB1P09429 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC22.05■■□□□ 1.12
HMGB1P09429 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC22.05■■□□□ 1.12
HMGB1P09429 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC22.05■■□□□ 1.12
HMGB1P09429 MIR4674-201ENST00000582457 87 ntBASIC22.05■■□□□ 1.12
HMGB1P09429 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
HMGB1P09429 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC22.05■■□□□ 1.12
HMGB1P09429 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC22.05■■□□□ 1.12
HMGB1P09429 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC22.05■■□□□ 1.12
HMGB1P09429 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC22.05■■□□□ 1.12
Retrieved 100 of 98,524 protein–RNA pairs in 43.1 ms