Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
HOXD4P09016 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
HOXD4P09016 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
HOXD4P09016 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
HOXD4P09016 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC16.96■□□□□ 0.3
HOXD4P09016 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
HOXD4P09016 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.3
HOXD4P09016 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC16.96■□□□□ 0.3
HOXD4P09016 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
HOXD4P09016 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC16.95■□□□□ 0.3
HOXD4P09016 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HOXD4P09016 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
HOXD4P09016 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
HOXD4P09016 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
HOXD4P09016 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC16.95■□□□□ 0.3
HOXD4P09016 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HOXD4P09016 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
HOXD4P09016 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC16.95■□□□□ 0.3
HOXD4P09016 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
HOXD4P09016 AC112907.3-201ENST00000577781 2400 ntBASIC16.95■□□□□ 0.3
HOXD4P09016 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
HOXD4P09016 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC16.95■□□□□ 0.3
HOXD4P09016 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC16.95■□□□□ 0.3
HOXD4P09016 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HOXD4P09016 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HOXD4P09016 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC16.95■□□□□ 0.3
HOXD4P09016 DAP-202ENST00000432074 1048 ntTSL 2 BASIC16.95■□□□□ 0.3
HOXD4P09016 AC009947.2-201ENST00000444014 672 ntBASIC16.95■□□□□ 0.3
HOXD4P09016 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
HOXD4P09016 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC16.95■□□□□ 0.3
HOXD4P09016 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
HOXD4P09016 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC16.95■□□□□ 0.3
HOXD4P09016 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
HOXD4P09016 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
HOXD4P09016 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC16.95■□□□□ 0.3
HOXD4P09016 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC16.95■□□□□ 0.3
HOXD4P09016 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC16.95■□□□□ 0.3
HOXD4P09016 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
HOXD4P09016 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
HOXD4P09016 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC16.95■□□□□ 0.3
HOXD4P09016 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
HOXD4P09016 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HOXD4P09016 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
HOXD4P09016 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC16.95■□□□□ 0.3
HOXD4P09016 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC16.94■□□□□ 0.3
HOXD4P09016 USP39-204ENST00000409766 2033 ntTSL 2 BASIC16.94■□□□□ 0.3
HOXD4P09016 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HOXD4P09016 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HOXD4P09016 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
HOXD4P09016 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC16.94■□□□□ 0.3
HOXD4P09016 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
HOXD4P09016 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HOXD4P09016 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC16.94■□□□□ 0.3
HOXD4P09016 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC16.94■□□□□ 0.3
HOXD4P09016 AL441883.1-201ENST00000566170 1045 ntBASIC16.94■□□□□ 0.3
HOXD4P09016 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
HOXD4P09016 AL023973.1-201ENST00000624619 620 ntBASIC16.94■□□□□ 0.3
HOXD4P09016 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC16.94■□□□□ 0.3
HOXD4P09016 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HOXD4P09016 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC16.94■□□□□ 0.3
HOXD4P09016 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HOXD4P09016 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HOXD4P09016 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC16.94■□□□□ 0.3
HOXD4P09016 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HOXD4P09016 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
HOXD4P09016 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
HOXD4P09016 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
HOXD4P09016 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
HOXD4P09016 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC16.93■□□□□ 0.3
HOXD4P09016 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HOXD4P09016 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
HOXD4P09016 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC16.93■□□□□ 0.3
HOXD4P09016 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC16.93■□□□□ 0.3
HOXD4P09016 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HOXD4P09016 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC16.93■□□□□ 0.3
HOXD4P09016 AC093503.3-201ENST00000624917 2352 ntBASIC16.93■□□□□ 0.3
HOXD4P09016 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HOXD4P09016 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HOXD4P09016 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
HOXD4P09016 GAD2-202ENST00000376248 680 ntTSL 5 BASIC16.93■□□□□ 0.3
HOXD4P09016 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
HOXD4P09016 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HOXD4P09016 COPS8-203ENST00000409334 794 ntTSL 5 BASIC16.93■□□□□ 0.3
HOXD4P09016 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC16.93■□□□□ 0.3
HOXD4P09016 TSPY23P-201ENST00000440136 739 ntBASIC16.93■□□□□ 0.3
HOXD4P09016 AL671277.2-201ENST00000458060 996 ntBASIC16.93■□□□□ 0.3
HOXD4P09016 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC16.93■□□□□ 0.3
HOXD4P09016 TOLLIP-AS1-201ENST00000530897 939 ntBASIC16.93■□□□□ 0.3
HOXD4P09016 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC16.93■□□□□ 0.3
HOXD4P09016 KRT126P-201ENST00000549467 1181 ntBASIC16.93■□□□□ 0.3
HOXD4P09016 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC16.93■□□□□ 0.3
HOXD4P09016 WDR88-203ENST00000592765 651 ntTSL 5 BASIC16.93■□□□□ 0.3
HOXD4P09016 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC16.93■□□□□ 0.3
HOXD4P09016 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC16.93■□□□□ 0.3
HOXD4P09016 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HOXD4P09016 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HOXD4P09016 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC16.93■□□□□ 0.3
HOXD4P09016 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC16.93■□□□□ 0.3
HOXD4P09016 PCDHB18P-201ENST00000524813 2368 ntBASIC16.93■□□□□ 0.3
HOXD4P09016 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC16.93■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 50 ms