Protein–RNA interactions for Protein: O75127

PTCD1, Pentatricopeptide repeat-containing protein 1, mitochondrial, humanhuman

Known RBP Predictions only

Length 700 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD1O75127 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
PTCD1O75127 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC24.02■■□□□ 1.44
PTCD1O75127 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC24.02■■□□□ 1.44
PTCD1O75127 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
PTCD1O75127 IGHV3-41-201ENST00000613121 348 ntBASIC24.02■■□□□ 1.44
PTCD1O75127 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC24.02■■□□□ 1.44
PTCD1O75127 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC24.02■■□□□ 1.44
PTCD1O75127 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC24.02■■□□□ 1.44
PTCD1O75127 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
PTCD1O75127 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC24.02■■□□□ 1.44
PTCD1O75127 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
PTCD1O75127 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC24.02■■□□□ 1.44
PTCD1O75127 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC24.02■■□□□ 1.44
PTCD1O75127 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC24.02■■□□□ 1.43
PTCD1O75127 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC24.01■■□□□ 1.43
PTCD1O75127 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC24.01■■□□□ 1.43
PTCD1O75127 PBK-203ENST00000522944 1499 ntTSL 2 BASIC24.01■■□□□ 1.43
PTCD1O75127 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC24.01■■□□□ 1.43
PTCD1O75127 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC24.01■■□□□ 1.43
PTCD1O75127 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC24.01■■□□□ 1.43
PTCD1O75127 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC24.01■■□□□ 1.43
PTCD1O75127 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC24.01■■□□□ 1.43
PTCD1O75127 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
PTCD1O75127 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
PTCD1O75127 AC138894.3-201ENST00000603787 634 ntBASIC24.01■■□□□ 1.43
PTCD1O75127 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
PTCD1O75127 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC24.01■■□□□ 1.43
PTCD1O75127 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
PTCD1O75127 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
PTCD1O75127 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
PTCD1O75127 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
PTCD1O75127 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
PTCD1O75127 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
PTCD1O75127 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC24.01■■□□□ 1.43
PTCD1O75127 LINC00167-201ENST00000530583 1419 ntBASIC24.01■■□□□ 1.43
PTCD1O75127 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
PTCD1O75127 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC24■■□□□ 1.43
PTCD1O75127 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC24■■□□□ 1.43
PTCD1O75127 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
PTCD1O75127 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC24■■□□□ 1.43
PTCD1O75127 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
PTCD1O75127 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC24■■□□□ 1.43
PTCD1O75127 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
PTCD1O75127 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC24■■□□□ 1.43
PTCD1O75127 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
PTCD1O75127 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC24■■□□□ 1.43
PTCD1O75127 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC24■■□□□ 1.43
PTCD1O75127 AC104819.1-201ENST00000504587 486 ntBASIC24■■□□□ 1.43
PTCD1O75127 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC24■■□□□ 1.43
PTCD1O75127 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC24■■□□□ 1.43
PTCD1O75127 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC24■■□□□ 1.43
PTCD1O75127 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC24■■□□□ 1.43
PTCD1O75127 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC24■■□□□ 1.43
PTCD1O75127 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC24■■□□□ 1.43
PTCD1O75127 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC24■■□□□ 1.43
PTCD1O75127 UBQLN4P1-201ENST00000461599 1801 ntBASIC24■■□□□ 1.43
PTCD1O75127 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
PTCD1O75127 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC24■■□□□ 1.43
PTCD1O75127 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC24■■□□□ 1.43
PTCD1O75127 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC24■■□□□ 1.43
PTCD1O75127 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC24■■□□□ 1.43
PTCD1O75127 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC24■■□□□ 1.43
PTCD1O75127 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
PTCD1O75127 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
PTCD1O75127 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
PTCD1O75127 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC23.99■■□□□ 1.43
PTCD1O75127 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC23.99■■□□□ 1.43
PTCD1O75127 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC23.99■■□□□ 1.43
PTCD1O75127 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC23.99■■□□□ 1.43
PTCD1O75127 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
PTCD1O75127 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC23.99■■□□□ 1.43
PTCD1O75127 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC23.99■■□□□ 1.43
PTCD1O75127 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
PTCD1O75127 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC23.99■■□□□ 1.43
PTCD1O75127 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC23.99■■□□□ 1.43
PTCD1O75127 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC23.99■■□□□ 1.43
PTCD1O75127 AC074051.2-201ENST00000565115 352 ntBASIC23.99■■□□□ 1.43
PTCD1O75127 AC090616.6-201ENST00000582640 721 ntBASIC23.99■■□□□ 1.43
PTCD1O75127 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC23.99■■□□□ 1.43
PTCD1O75127 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC23.99■■□□□ 1.43
PTCD1O75127 GXYLT1P4-201ENST00000613576 1192 ntBASIC23.99■■□□□ 1.43
PTCD1O75127 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC23.99■■□□□ 1.43
PTCD1O75127 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC23.99■■□□□ 1.43
PTCD1O75127 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
PTCD1O75127 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
PTCD1O75127 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC23.99■■□□□ 1.43
PTCD1O75127 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
PTCD1O75127 AL158211.5-201ENST00000623583 2518 ntBASIC23.99■■□□□ 1.43
PTCD1O75127 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
PTCD1O75127 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC23.98■■□□□ 1.43
PTCD1O75127 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC23.98■■□□□ 1.43
PTCD1O75127 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC23.98■■□□□ 1.43
PTCD1O75127 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
PTCD1O75127 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC23.98■■□□□ 1.43
PTCD1O75127 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC23.98■■□□□ 1.43
PTCD1O75127 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
PTCD1O75127 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC23.98■■□□□ 1.43
PTCD1O75127 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC23.98■■□□□ 1.43
PTCD1O75127 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
PTCD1O75127 AL160237.2-201ENST00000556165 472 ntBASIC23.98■■□□□ 1.43
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms