Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC20.45■□□□□ 0.86
CLDN3O15551 HEIH-201ENST00000623091 1652 ntBASIC20.45■□□□□ 0.86
CLDN3O15551 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CLDN3O15551 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC20.45■□□□□ 0.86
CLDN3O15551 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
CLDN3O15551 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC20.45■□□□□ 0.86
CLDN3O15551 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
CLDN3O15551 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CLDN3O15551 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC20.45■□□□□ 0.86
CLDN3O15551 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC20.45■□□□□ 0.86
CLDN3O15551 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC20.45■□□□□ 0.86
CLDN3O15551 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC20.45■□□□□ 0.86
CLDN3O15551 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC20.45■□□□□ 0.86
CLDN3O15551 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CLDN3O15551 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC20.45■□□□□ 0.86
CLDN3O15551 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC20.45■□□□□ 0.86
CLDN3O15551 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
CLDN3O15551 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CLDN3O15551 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CLDN3O15551 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
CLDN3O15551 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CLDN3O15551 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
CLDN3O15551 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CLDN3O15551 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
CLDN3O15551 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC20.45■□□□□ 0.86
CLDN3O15551 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
CLDN3O15551 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CLDN3O15551 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
CLDN3O15551 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
CLDN3O15551 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CLDN3O15551 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CLDN3O15551 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC20.44■□□□□ 0.86
CLDN3O15551 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CLDN3O15551 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
CLDN3O15551 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC20.44■□□□□ 0.86
CLDN3O15551 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CLDN3O15551 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
CLDN3O15551 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CLDN3O15551 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC20.44■□□□□ 0.86
CLDN3O15551 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
CLDN3O15551 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CLDN3O15551 AK4P3-201ENST00000418260 669 ntBASIC20.44■□□□□ 0.86
CLDN3O15551 AC117947.1-201ENST00000427448 529 ntBASIC20.44■□□□□ 0.86
CLDN3O15551 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC20.44■□□□□ 0.86
CLDN3O15551 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC20.44■□□□□ 0.86
CLDN3O15551 YBX1P2-201ENST00000489612 999 ntBASIC20.44■□□□□ 0.86
CLDN3O15551 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC20.44■□□□□ 0.86
CLDN3O15551 AC140113.3-201ENST00000605663 199 ntBASIC20.44■□□□□ 0.86
CLDN3O15551 AC083906.6-201ENST00000641366 219 ntBASIC20.44■□□□□ 0.86
CLDN3O15551 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CLDN3O15551 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC20.44■□□□□ 0.86
CLDN3O15551 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CLDN3O15551 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CLDN3O15551 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
CLDN3O15551 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
CLDN3O15551 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CLDN3O15551 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CLDN3O15551 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CLDN3O15551 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC20.43■□□□□ 0.86
CLDN3O15551 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CLDN3O15551 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
CLDN3O15551 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC20.43■□□□□ 0.86
CLDN3O15551 DUX4L26-201ENST00000489078 1255 ntBASIC20.43■□□□□ 0.86
CLDN3O15551 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CLDN3O15551 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CLDN3O15551 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CLDN3O15551 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CLDN3O15551 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CLDN3O15551 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CLDN3O15551 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CLDN3O15551 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CLDN3O15551 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CLDN3O15551 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC20.42■□□□□ 0.86
CLDN3O15551 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CLDN3O15551 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
CLDN3O15551 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
CLDN3O15551 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC20.42■□□□□ 0.86
CLDN3O15551 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
CLDN3O15551 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CLDN3O15551 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC20.42■□□□□ 0.86
CLDN3O15551 ANKRD20A18P-201ENST00000359341 492 ntBASIC20.42■□□□□ 0.86
CLDN3O15551 GAD2-202ENST00000376248 680 ntTSL 5 BASIC20.42■□□□□ 0.86
CLDN3O15551 MIR564-202ENST00000385049 94 ntBASIC20.42■□□□□ 0.86
CLDN3O15551 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC20.42■□□□□ 0.86
CLDN3O15551 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC20.42■□□□□ 0.86
CLDN3O15551 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC20.42■□□□□ 0.86
CLDN3O15551 AL049597.2-201ENST00000565575 961 ntBASIC20.42■□□□□ 0.86
CLDN3O15551 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
CLDN3O15551 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CLDN3O15551 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CLDN3O15551 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
CLDN3O15551 AC006333.2-201ENST00000607957 2099 ntBASIC20.42■□□□□ 0.86
CLDN3O15551 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC20.42■□□□□ 0.86
CLDN3O15551 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC20.42■□□□□ 0.86
CLDN3O15551 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
CLDN3O15551 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC20.42■□□□□ 0.86
CLDN3O15551 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC20.42■□□□□ 0.86
CLDN3O15551 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
CLDN3O15551 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CLDN3O15551 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms